Variant report
| Variant | rs62572504 |
|---|---|
| Chromosome Location | chr5:119759189-119759190 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1470617 | 1.00[ASN][1000 genomes] |
| rs16906519 | 1.00[ASN][1000 genomes] |
| rs16906524 | 1.00[ASN][1000 genomes] |
| rs16906529 | 1.00[ASN][1000 genomes] |
| rs1808049 | 1.00[ASN][1000 genomes] |
| rs2152573 | 1.00[ASN][1000 genomes] |
| rs4563976 | 1.00[ASN][1000 genomes] |
| rs56762773 | 1.00[ASN][1000 genomes] |
| rs57027800 | 1.00[ASN][1000 genomes] |
| rs57041982 | 1.00[ASN][1000 genomes] |
| rs57360762 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57621534 | 1.00[ASN][1000 genomes] |
| rs58533463 | 1.00[ASN][1000 genomes] |
| rs60653293 | 1.00[ASN][1000 genomes] |
| rs62572481 | 0.89[EUR][1000 genomes] |
| rs62572492 | 0.89[EUR][1000 genomes] |
| rs62572494 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs62572525 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs62572527 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62572529 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62572530 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62572531 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7031401 | 1.00[ASN][1000 genomes] |
| rs73454884 | 1.00[ASN][1000 genomes] |
| rs73454888 | 1.00[ASN][1000 genomes] |
| rs73454890 | 1.00[ASN][1000 genomes] |
| rs73454902 | 1.00[ASN][1000 genomes] |
| rs73456726 | 1.00[ASN][1000 genomes] |
| rs7853405 | 1.00[ASN][1000 genomes] |
| rs7865514 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532200 | chr5:119317901-120102513 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1018955 | chr5:119679918-119802014 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1020655 | chr5:119729801-119781762 | ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1018100 | chr5:119749898-119802014 | Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:119742000-119775000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
