Variant report

Variant	rs4563976
Chromosome Location	chr9:22791411-22791412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1448778	0.88[AFR][1000 genomes]
rs1470617	1.00[ASN][1000 genomes]
rs16906519	1.00[ASN][1000 genomes]
rs16906524	1.00[ASN][1000 genomes]
rs16906529	1.00[ASN][1000 genomes]
rs1808049	1.00[ASN][1000 genomes]
rs1999761	0.84[AFR][1000 genomes]
rs2152573	1.00[ASN][1000 genomes]
rs56762773	1.00[ASN][1000 genomes]
rs57027800	1.00[ASN][1000 genomes]
rs57041982	1.00[ASN][1000 genomes]
rs57360762	1.00[ASN][1000 genomes]
rs57621534	1.00[ASN][1000 genomes]
rs58533463	1.00[ASN][1000 genomes]
rs59063023	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60653293	1.00[ASN][1000 genomes]
rs62572504	1.00[ASN][1000 genomes]
rs62572527	1.00[ASN][1000 genomes]
rs62572529	1.00[ASN][1000 genomes]
rs62572530	1.00[ASN][1000 genomes]
rs62572531	1.00[ASN][1000 genomes]
rs7031401	1.00[ASN][1000 genomes]
rs73454884	1.00[ASN][1000 genomes]
rs73454888	1.00[ASN][1000 genomes]
rs73454890	1.00[ASN][1000 genomes]
rs73454902	1.00[ASN][1000 genomes]
rs73456726	1.00[ASN][1000 genomes]
rs73653816	0.91[EUR][1000 genomes]
rs7853405	1.00[ASN][1000 genomes]
rs7865514	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1029289	chr9:22193167-23023688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv869121	chr9:22382290-23232146	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2761508	chr9:22400968-22819938	Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv533941	chr9:22416549-23232146	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1016037	chr9:22703983-22929532	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv892765	chr9:22705094-22847961	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1030847	chr9:22740232-22795971	Enhancers Weak transcription Bivalent Enhancer	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv892767	chr9:22781709-22934249	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22725800-22801600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:22763800-22803600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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