Variant report

Variant	rs62581419
Chromosome Location	chr9:139694012-139694013
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:139693189-139695805	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr9:139692561-139696180	HepG2	liver:	n/a	n/a
3	MBD4	chr9:139693067-139694144	HepG2	liver:	n/a	n/a
4	ELF1	chr9:139693438-139694076	MCF-7	breast:	n/a	n/a
5	POLR2A	chr9:139693184-139694661	GM12878	blood:	n/a	n/a
6	E2F6	chr9:139693992-139694831	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr9:139692995-139694671	ECC-1	luminal epithelium:	n/a	n/a
8	POLR2A	chr9:139692967-139697247	MCF10A-Er-Src	breast:	n/a	n/a
9	POLR2A	chr9:139693049-139696183	MCF10A-Er-Src	breast:	n/a	n/a
10	MAX	chr9:139693841-139695961	A549	lung:	n/a	chr9:139694640-139694650
11	MAX	chr9:139694003-139694895	MCF-7	breast:	n/a	chr9:139694640-139694650
12	SP1	chr9:139693399-139694047	HepG2	liver:	n/a	chr9:139693408-139693422
13	CEBPD	chr9:139693239-139695101	HepG2	liver:	n/a	n/a
14	POLR2A	chr9:139693250-139694533	PBDE	blood:	n/a	n/a
15	TCF12	chr9:139693090-139694472	A549	lung:	n/a	chr9:139693339-139693346 chr9:139693495-139693503
16	POLR2A	chr9:139682141-139704512	HepG2	liver:	n/a	n/a
17	FOXA2	chr9:139693468-139694037	A549	lung:	n/a	n/a
18	POLR2A	chr9:139693443-139694677	HL-60	blood:	n/a	n/a
19	FOXA1	chr9:139693068-139694026	HepG2	liver:	n/a	chr9:139693722-139693737
20	YY1	chr9:139693243-139694097	HepG2	liver:	n/a	n/a
21	POLR2A	chr9:139693461-139694012	A549	lung:	n/a	n/a
22	POLR2A	chr9:139692955-139694661	HepG2	liver:	n/a	n/a
23	MAX	chr9:139694005-139694842	A549	lung:	n/a	chr9:139694640-139694650
24	TAF1	chr9:139693112-139695173	HepG2	liver:	n/a	n/a
25	MAX	chr9:139693017-139695932	HepG2	liver:	n/a	chr9:139694640-139694650 chr9:139693471-139693480
26	HEY1	chr9:139692888-139695999	HepG2	liver:	n/a	chr9:139694684-139694699 chr9:139695023-139695038 chr9:139694635-139694650
27	TBP	chr9:139693984-139694667	HepG2	liver:	n/a	n/a
28	GABPA	chr9:139693912-139694616	H1-hESC	embryonic stem cell:	n/a	n/a
29	MYBL2	chr9:139692890-139694707	HepG2	liver:	n/a	n/a
30	POLR2A	chr9:139693067-139695102	HepG2	liver:	n/a	n/a
31	POLR2A	chr9:139692969-139695128	HepG2	liver:	n/a	n/a
32	POLR2A	chr9:139693290-139695928	MCF-7	breast:	n/a	n/a
33	POLR2A	chr9:139693151-139696115	MCF-7	breast:	n/a	n/a
34	JUND	chr9:139693460-139694049	HepG2	liver:	n/a	n/a
35	FOSL2	chr9:139693234-139694021	HepG2	liver:	n/a	n/a
36	MAX	chr9:139693424-139695952	MCF-7	breast:	n/a	chr9:139694640-139694650 chr9:139693471-139693480
37	HDAC2	chr9:139693467-139695096	MCF-7	breast:	n/a	n/a
38	TCF12	chr9:139693924-139694895	ECC-1	luminal epithelium:	n/a	n/a
39	MBD4	chr9:139693260-139694025	HepG2	liver:	n/a	n/a
40	POLR2A	chr9:139693132-139695785	HepG2	liver:	n/a	n/a
41	CREB1	chr9:139692968-139695959	HepG2	liver:	n/a	n/a
42	MAX	chr9:139693968-139695047	ECC-1	luminal epithelium:	n/a	chr9:139694640-139694650
43	SP1	chr9:139693979-139695055	A549	lung:	n/a	chr9:139694677-139694688 chr9:139694693-139694705 chr9:139694735-139694744 chr9:139694625-139694637 chr9:139694640-139694650 chr9:139694678-139694688 chr9:139694695-139694704 chr9:139694679-139694688 chr9:139694644-139694656 chr9:139694677-139694689 chr9:139694734-139694744 chr9:139694693-139694705 chr9:139694735-139694744 chr9:139694622-139694636 chr9:139694694-139694703 chr9:139694641-139694650 chr9:139694730-139694744 chr9:139694625-139694636 chr9:139694677-139694689 chr9:139694678-139694687 chr9:139694640-139694649 chr9:139694693-139694704 chr9:139694679-139694688 chr9:139694674-139694688 chr9:139694639-139694651 chr9:139694734-139694744 chr9:139694733-139694745 chr9:139694636-139694650 chr9:139694733-139694745 chr9:139694690-139694704 chr9:139694639-139694650 chr9:139695012-139695021 chr9:139694627-139694636 chr9:139694734-139694743 chr9:139694678-139694688 chr9:139694639-139694651
44	SIN3AK20	chr9:139693292-139695988	MCF-7	breast:	n/a	n/a
45	TAF1	chr9:139693285-139695106	HepG2	liver:	n/a	n/a
46	MYBL2	chr9:139692980-139694656	HepG2	liver:	n/a	n/a
47	POLR2A	chr9:139693573-139694059	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:139257747..139259328-chr9:139692821..139695681,2	MCF-7	breast:
2	chr9:139691906..139694692-chr9:139746602..139748175,2	K562	blood:
3	chr9:139693022..139696090-chr9:139793195..139796394,4	MCF-7	breast:
4	chr9:139693981..139696739-chr9:139937484..139940403,2	K562	blood:
5	chr9:139693062..139698077-chr9:139715739..139719346,4	K562	blood:
6	chr9:139692582..139697157-chr9:139741560..139746001,12	MCF-7	breast:
7	chr9:139692835..139695036-chr9:139735254..139738901,4	MCF-7	breast:
8	chr9:139619516..139623685-chr9:139693810..139697808,6	K562	blood:
9	chr9:139692613..139695427-chr9:139886563..139888609,3	MCF-7	breast:
10	chr9:139693946..139696412-chr9:139837161..139840313,3	MCF-7	breast:
11	chr9:139691318..139694320-chr9:139739366..139743319,3	K562	blood:
12	chr9:139693327..139695120-chr9:139920387..139922452,2	K562	blood:
13	chr9:139692738..139694720-chr9:139709911..139711843,2	K562	blood:
14	chr9:139691633..139694818-chr9:139759227..139762534,3	K562	blood:
15	chr9:139682195..139706361-chr9:139728316..139752024,110	MCF-7	breast:

Variant related genes	Relation type
CCDC183	TF binding region
ENSG00000272679	TF binding region
ENSG00000180539	Chromatin interaction
ENSG00000196642	Chromatin interaction
ENSG00000054148	Chromatin interaction
ENSG00000233016	Chromatin interaction
ENSG00000213212	Chromatin interaction
ENSG00000177943	Chromatin interaction
ENSG00000107281	Chromatin interaction
ENSG00000127191	Chromatin interaction
ENSG00000159069	Chromatin interaction
ENSG00000232434	Chromatin interaction
ENSG00000148362	Chromatin interaction
ENSG00000107223	Chromatin interaction
ENSG00000213221	Chromatin interaction
ENSG00000176919	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10123424	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11145887	0.82[EUR][1000 genomes]
rs3739950	0.83[EUR][1000 genomes]
rs4442241	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4546744	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62581361	0.82[EUR][1000 genomes]
rs62581390	0.83[EUR][1000 genomes]
rs6560648	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7048453	0.82[EUR][1000 genomes]
rs7846926	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7859194	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs945386	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:49 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849811	chr9:138939662-139755001	Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
2	esv1822553	chr9:138967205-139755539	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
3	esv1851120	chr9:139101947-139711758	Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
4	nsv430118	chr9:139101947-139795504	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	299 gene(s)	inside rSNPs	diseases
5	nsv540342	chr9:139218422-139973312	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	317 gene(s)	inside rSNPs	diseases
6	esv2758204	chr9:139252829-139826485	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	270 gene(s)	inside rSNPs	diseases
7	esv2759720	chr9:139252829-139826485	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	270 gene(s)	inside rSNPs	diseases
8	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
9	esv1799492	chr9:139341612-139711758	Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	216 gene(s)	inside rSNPs	diseases
10	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
11	nsv1039149	chr9:139376829-139991102	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	303 gene(s)	inside rSNPs	diseases
12	esv1829857	chr9:139385438-139760041	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
13	esv1819204	chr9:139388365-139758238	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
14	esv1803979	chr9:139395473-139979276	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
15	esv1831778	chr9:139395473-139979276	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
16	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
17	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
18	nsv894409	chr9:139483954-139860264	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	209 gene(s)	inside rSNPs	diseases
19	nsv894422	chr9:139487092-139776400	Transcr. at gene 5' and 3' Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
20	nsv894432	chr9:139522101-139869914	Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	205 gene(s)	inside rSNPs	diseases
21	nsv894440	chr9:139544437-139841512	Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	194 gene(s)	inside rSNPs	diseases
22	nsv894441	chr9:139544437-139860264	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
23	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
24	nsv894450	chr9:139598108-139776400	Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	130 gene(s)	inside rSNPs	diseases
25	nsv894451	chr9:139598108-139995065	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
26	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
27	nsv894454	chr9:139607966-139904037	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	172 gene(s)	inside rSNPs	diseases
28	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
29	nsv1051605	chr9:139620105-139728697	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
30	nsv540350	chr9:139620105-139728697	Bivalent Enhancer Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
31	nsv818738	chr9:139634495-139904037	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	126 gene(s)	inside rSNPs	diseases
32	nsv894457	chr9:139650448-139776400	Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	79 gene(s)	inside rSNPs	diseases
33	nsv540351	chr9:139664948-139703627	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
34	nsv894458	chr9:139683224-139776400	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
35	nsv894459	chr9:139683224-139787453	Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	80 gene(s)	inside rSNPs	diseases
36	nsv894460	chr9:139683224-139810595	Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	83 gene(s)	inside rSNPs	diseases
37	nsv894461	chr9:139683224-139860264	Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
38	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
39	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
40	esv29973	chr9:139690144-139754110	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
41	nsv894464	chr9:139690144-139776400	Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
42	nsv894465	chr9:139690144-139795504	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases
43	esv1846327	chr9:139690144-139841512	Active TSS Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	86 gene(s)	inside rSNPs	diseases
44	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
45	nsv894466	chr9:139693992-139784683	Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
46	nsv894467	chr9:139693992-139810595	Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
47	nsv894468	chr9:139693992-139860264	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	92 gene(s)	inside rSNPs	diseases
48	nsv894469	chr9:139693992-140118448	Bivalent Enhancer Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
49	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs62581419	LCN8	Cis_1M	lymphoblastoid	RTeQTL
rs62581419	LCN8	cis	Whole Blood	GTEx
rs62581419	PHPT1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139687200-139694400	Weak transcription	Brain Substantia Nigra	brain
2	chr9:139690400-139694400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr9:139693000-139695600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
4	chr9:139693200-139694400	Enhancers	Esophagus	oesophagus
5	chr9:139693200-139694400	Enhancers	Lung	lung
6	chr9:139693200-139694600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
7	chr9:139693200-139694600	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
8	chr9:139693200-139694800	Bivalent Enhancer	Fetal Muscle Leg	muscle
9	chr9:139693200-139695800	Enhancers	Placenta Amnion	Placenta Amnion
10	chr9:139693400-139694200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:139693400-139694200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
12	chr9:139693400-139694200	Flanking Active TSS	A549	lung
13	chr9:139693400-139694200	Bivalent Enhancer	Dnd41	blood
14	chr9:139693400-139694400	Bivalent Enhancer	Fetal Lung	lung
15	chr9:139693400-139694400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
16	chr9:139693400-139695000	Enhancers	Fetal Heart	heart
17	chr9:139693400-139695600	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr9:139693400-139695800	Enhancers	Spleen	Spleen
19	chr9:139693600-139694200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
20	chr9:139693600-139694200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr9:139693600-139694200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr9:139693600-139694200	Active TSS	HepG2	liver
23	chr9:139693600-139694200	Bivalent Enhancer	HMEC	breast
24	chr9:139693600-139694200	Bivalent Enhancer	NHEK	skin
25	chr9:139693600-139694400	Enhancers	Primary hematopoietic stem cells	blood
26	chr9:139693600-139694400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr9:139693600-139694400	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
28	chr9:139693600-139694600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr9:139693600-139694800	Bivalent/Poised TSS	Fetal Brain Female	brain
30	chr9:139693600-139695000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
31	chr9:139693800-139694200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr9:139693800-139694200	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr9:139693800-139694200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
34	chr9:139693800-139694200	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
35	chr9:139693800-139694200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr9:139693800-139694200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr9:139693800-139694200	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr9:139693800-139694200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr9:139693800-139694200	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
40	chr9:139693800-139694200	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
41	chr9:139693800-139694200	Flanking Active TSS	Ovary	ovary
42	chr9:139693800-139694200	Flanking Active TSS	Pancreas	Pancrea
43	chr9:139693800-139694200	Enhancers	Right Ventricle	heart
44	chr9:139693800-139694200	Enhancers	Stomach Mucosa	stomach
45	chr9:139693800-139694400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
46	chr9:139693800-139694400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
47	chr9:139693800-139694400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
48	chr9:139693800-139694400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
49	chr9:139693800-139694400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
50	chr9:139693800-139694400	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood

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