Variant report

Variant	rs62641608
Chromosome Location	chr1:56129008-56129009
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11206659	0.85[ASN][1000 genomes]
rs12036264	0.85[ASN][1000 genomes]
rs12407237	0.83[ASN][1000 genomes]
rs4367813	0.85[ASN][1000 genomes]
rs55810987	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61776395	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9326036	0.85[ASN][1000 genomes]
rs9436521	0.85[ASN][1000 genomes]
rs9436522	0.85[ASN][1000 genomes]
rs9436524	0.85[ASN][1000 genomes]
rs9436525	0.85[ASN][1000 genomes]
rs9436526	0.85[ASN][1000 genomes]
rs9436981	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014866	chr1:56059054-56129092	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv526148	chr1:56101597-56146450	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
3	esv2562695	chr1:56126142-56134151	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
4	esv3343575	chr1:56128014-56134012	ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
5	esv3371681	chr1:56128164-56134062	ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
6	esv3361582	chr1:56128889-56131937	ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56128000-56130000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr1:56128800-56129600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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