Variant report

Variant	rs9436522
Chromosome Location	chr1:56138040-56138041
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56137224..56139616-chr1:56156746..56159633,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10443236	0.83[CEU][hapmap]
rs11206647	0.84[CEU][hapmap]
rs11206648	0.83[CEU][hapmap]
rs11206650	0.84[CEU][hapmap]
rs11206659	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1165480	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1165484	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1165485	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1165486	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1182821	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1183736	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs12036264	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117312	0.84[CEU][hapmap]
rs12124393	0.83[CEU][hapmap]
rs12405865	0.83[CEU][hapmap]
rs12407237	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1514142	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs1514146	0.83[ASN][1000 genomes]
rs1955318	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2671227	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2671231	0.83[ASN][1000 genomes]
rs2671232	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2671234	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2671238	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2671239	0.87[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2671240	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2671241	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2671242	0.85[ASN][1000 genomes]
rs2671245	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2767502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2767503	0.87[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2767508	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2767509	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2767513	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2767514	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2767515	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2767516	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2767518	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2767519	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2819472	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2819473	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2819474	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2819477	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2819479	0.84[ASN][1000 genomes]
rs2819487	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2819488	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2819490	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs3914413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4367813	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62641608	0.85[ASN][1000 genomes]
rs6667315	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs748284	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9326036	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436520	0.95[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9436521	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436526	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436981	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436982	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9436984	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526148	chr1:56101597-56146450	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56135600-56139000	Weak transcription	Fetal Heart	heart
2	chr1:56135800-56138600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56135800-56139000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:56135800-56162000	Weak transcription	Aorta	Aorta
5	chr1:56136800-56139800	Weak transcription	HSMM	muscle
6	chr1:56137600-56139400	Weak transcription	Fetal Lung	lung
7	chr1:56138000-56155600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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