Variant report

Variant	rs1955318
Chromosome Location	chr1:56133634-56133635
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10443236	0.85[CEU][hapmap];0.83[GIH][hapmap];0.81[TSI][hapmap]
rs11206647	0.85[CEU][hapmap]
rs11206648	0.85[CEU][hapmap];0.83[GIH][hapmap];0.81[TSI][hapmap]
rs11206650	0.85[CEU][hapmap]
rs11206659	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1165480	0.89[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs1165484	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs1165485	0.93[JPT][hapmap]
rs1165486	0.83[CHD][hapmap];0.93[JPT][hapmap]
rs1182821	0.93[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1183736	0.83[CHD][hapmap];0.93[JPT][hapmap]
rs12036264	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117312	0.85[CEU][hapmap]
rs12124393	0.85[CEU][hapmap];0.83[GIH][hapmap];0.81[TSI][hapmap]
rs12405865	0.85[CEU][hapmap];0.83[GIH][hapmap];0.81[TSI][hapmap]
rs12407237	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1514142	0.92[JPT][hapmap]
rs1514146	0.83[ASN][1000 genomes]
rs2671227	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2671231	0.83[ASN][1000 genomes]
rs2671232	0.93[JPT][hapmap]
rs2671234	0.85[CHD][hapmap];0.93[JPT][hapmap]
rs2671238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2671239	0.85[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2671240	0.93[JPT][hapmap]
rs2671241	0.93[JPT][hapmap]
rs2671242	0.85[ASN][1000 genomes]
rs2671245	0.90[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs2767502	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2767503	0.85[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2767508	0.93[JPT][hapmap]
rs2767509	0.93[JPT][hapmap]
rs2767513	0.93[JPT][hapmap]
rs2767514	0.93[JPT][hapmap]
rs2767515	0.90[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2767516	0.93[JPT][hapmap]
rs2767518	0.93[JPT][hapmap]
rs2767519	0.93[JPT][hapmap]
rs2819472	0.84[CHB][hapmap];0.92[JPT][hapmap]
rs2819473	0.90[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap];0.85[ASN][1000 genomes]
rs2819474	0.90[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs2819477	0.93[JPT][hapmap]
rs2819479	0.84[ASN][1000 genomes]
rs2819487	0.93[JPT][hapmap]
rs2819488	0.93[JPT][hapmap]
rs2819490	0.93[JPT][hapmap]
rs3914413	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4367813	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62641608	0.85[ASN][1000 genomes]
rs6667315	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs748284	0.93[JPT][hapmap]
rs9326036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436520	0.92[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9436521	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436522	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436524	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436525	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436981	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436982	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9436984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526148	chr1:56101597-56146450	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	esv2562695	chr1:56126142-56134151	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	esv3343575	chr1:56128014-56134012	ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
4	esv3371681	chr1:56128164-56134062	ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
5	esv3379555	chr1:56131914-56134412	Enhancers	n/a	n/a	n/a	n/a
6	esv3344005	chr1:56131989-56134537	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links