Variant report

Variant	rs2819472
Chromosome Location	chr1:56168510-56168511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1165478	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1165480	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1165481	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1165482	0.85[EUR][1000 genomes]
rs1165483	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1165484	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1165485	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1165486	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs1182821	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs1183736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1514141	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1514142	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1877716	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1877717	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1955318	0.84[CHB][hapmap];0.92[JPT][hapmap]
rs2255776	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2671226	0.95[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap]
rs2671228	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2671229	0.82[AMR][1000 genomes]
rs2671232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2671233	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2671234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2671237	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2671238	0.84[CHB][hapmap];0.92[JPT][hapmap]
rs2671239	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2671240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2671241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2671245	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2767503	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2767504	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2767507	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2767508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2767509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2767513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2767514	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2767515	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2767516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2767518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2767519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2819473	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2819474	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2819476	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2819477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2819482	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2819487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2819488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2819489	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2819490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2819491	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4367813	0.84[CHB][hapmap];0.91[JPT][hapmap]
rs748284	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9326036	0.84[CHB][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap]
rs9436520	0.89[CHB][hapmap];0.92[JPT][hapmap]
rs9436522	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs9436526	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs9436984	0.84[CHB][hapmap];0.93[JPT][hapmap]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56158400-56170800	Enhancers	NHDF-Ad	bronchial
2	chr1:56161400-56169400	Weak transcription	Placenta	Placenta
3	chr1:56162400-56169400	Weak transcription	Ovary	ovary
4	chr1:56164800-56169000	Weak transcription	Fetal Lung	lung
5	chr1:56166400-56169600	Weak transcription	HSMMtube	muscle
6	chr1:56166400-56182200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:56166800-56169200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:56166800-56169200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:56166800-56169600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr1:56167000-56168800	Weak transcription	Colon Smooth Muscle	Colon
11	chr1:56167000-56169200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:56167400-56169200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:56167600-56169200	Weak transcription	Fetal Stomach	stomach
14	chr1:56167600-56174000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:56167800-56169000	Weak transcription	NHLF	lung
16	chr1:56167800-56169200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:56167800-56179000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:56167800-56181000	Weak transcription	HSMM	muscle
19	chr1:56168000-56180600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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