Variant report

Variant	rs2671238
Chromosome Location	chr1:56150704-56150705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56149093..56150819-chr1:56158899..56161171,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10443236	0.81[CEU][hapmap];0.83[GIH][hapmap];0.82[TSI][hapmap]
rs11206647	0.81[CEU][hapmap]
rs11206648	0.81[CEU][hapmap];0.83[GIH][hapmap];0.82[TSI][hapmap]
rs11206650	0.81[CEU][hapmap]
rs11206659	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1165478	0.81[ASN][1000 genomes]
rs1165480	0.89[CHB][hapmap];0.92[JPT][hapmap];0.81[YRI][hapmap];0.90[ASN][1000 genomes]
rs1165484	0.85[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs1165485	0.93[JPT][hapmap]
rs1165486	0.83[CHD][hapmap];0.93[JPT][hapmap]
rs1182821	0.93[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1183736	0.83[CHD][hapmap];0.93[JPT][hapmap]
rs12036264	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12117312	0.81[CEU][hapmap]
rs12124393	0.81[CEU][hapmap];0.83[GIH][hapmap];0.82[TSI][hapmap]
rs12405865	0.81[CEU][hapmap];0.83[GIH][hapmap];0.82[TSI][hapmap]
rs12407237	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1514141	0.81[ASN][1000 genomes]
rs1514142	0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs1514146	0.90[ASN][1000 genomes]
rs1877716	0.82[ASN][1000 genomes]
rs1877717	0.82[ASN][1000 genomes]
rs1955318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap]
rs2255776	0.82[ASN][1000 genomes]
rs2671227	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2671228	0.81[ASN][1000 genomes]
rs2671231	0.90[ASN][1000 genomes]
rs2671232	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2671233	0.82[ASN][1000 genomes]
rs2671234	0.85[CHD][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs2671239	0.85[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2671240	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2671241	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2671242	0.92[ASN][1000 genomes]
rs2671245	0.90[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs2767502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2767503	0.85[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2767504	0.80[ASN][1000 genomes]
rs2767507	0.81[ASN][1000 genomes]
rs2767508	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs2767509	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2767513	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2767514	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2767515	0.90[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.92[ASN][1000 genomes]
rs2767516	0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs2767518	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2767519	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2819472	0.84[CHB][hapmap];0.92[JPT][hapmap]
rs2819473	0.90[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs2819474	0.90[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs2819476	0.81[ASN][1000 genomes]
rs2819477	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs2819479	0.91[ASN][1000 genomes]
rs2819482	0.82[ASN][1000 genomes]
rs2819487	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2819488	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2819489	0.82[ASN][1000 genomes]
rs2819490	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2819491	0.82[ASN][1000 genomes]
rs3914413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4367813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6667315	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs748284	0.93[JPT][hapmap]
rs9326036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9436520	0.92[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9436521	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9436522	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9436524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9436525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9436526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9436981	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9436982	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9436984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56135800-56162000	Weak transcription	Aorta	Aorta
2	chr1:56138000-56155600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:56146200-56151000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:56146400-56155400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:56148200-56150800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:56148400-56150800	Weak transcription	Fetal Lung	lung
7	chr1:56149200-56151200	Enhancers	A549	lung
8	chr1:56149400-56150800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:56149400-56153400	Enhancers	NHDF-Ad	bronchial
10	chr1:56149800-56150800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:56150000-56150800	Enhancers	Osteobl	bone
12	chr1:56150000-56152600	Enhancers	Placenta Amnion	Placenta Amnion
13	chr1:56150200-56151200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:56150400-56151000	Enhancers	NHLF	lung
15	chr1:56150600-56151800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links