Variant report

Variant	rs1165485
Chromosome Location	chr1:56186190-56186191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56183975..56186829-chr1:56187423..56190169,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1165478	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1165480	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1165481	0.81[CEU][hapmap];0.91[EUR][1000 genomes]
rs1165482	0.92[EUR][1000 genomes]
rs1165483	0.80[CEU][hapmap];0.92[EUR][1000 genomes]
rs1165484	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1165486	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1182821	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs1183736	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1514141	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1514142	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1514146	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1877716	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1877717	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1955318	0.93[JPT][hapmap]
rs2255776	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2671226	0.95[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2671228	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2671231	0.82[EUR][1000 genomes]
rs2671232	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2671233	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2671234	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2671237	0.80[CEU][hapmap];0.92[EUR][1000 genomes]
rs2671238	0.93[JPT][hapmap]
rs2671239	0.80[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2671240	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2671241	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2671242	0.82[EUR][1000 genomes]
rs2671245	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2767503	0.80[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2767504	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2767507	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2767508	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2767509	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2767510	0.83[EUR][1000 genomes]
rs2767513	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2767514	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2767515	0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2767516	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2767518	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2767519	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2819472	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2819473	0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2819474	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2819476	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2819477	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2819479	0.81[EUR][1000 genomes]
rs2819482	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2819487	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2819488	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2819489	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2819490	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2819491	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4367813	0.92[JPT][hapmap]
rs748284	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9326036	0.93[JPT][hapmap]
rs9436520	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs9436522	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs9436526	0.94[JPT][hapmap]
rs9436984	0.94[JPT][hapmap]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56177800-56187800	Enhancers	Placenta	Placenta
2	chr1:56179800-56186800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:56180000-56186400	Enhancers	NHLF	lung
4	chr1:56180000-56190600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr1:56180400-56186600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:56180400-56186600	Enhancers	Osteobl	bone
7	chr1:56180600-56187200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr1:56181000-56187000	Enhancers	HSMM	muscle
9	chr1:56181400-56186600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:56181600-56186600	Enhancers	Placenta Amnion	Placenta Amnion
11	chr1:56181600-56186800	Enhancers	Fetal Stomach	stomach
12	chr1:56181600-56187200	Enhancers	Fetal Muscle Leg	muscle
13	chr1:56181800-56186200	Enhancers	Colon Smooth Muscle	Colon
14	chr1:56181800-56186400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:56181800-56186400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:56181800-56186400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:56181800-56186400	Enhancers	Fetal Lung	lung
18	chr1:56181800-56186400	Enhancers	NH-A	brain
19	chr1:56181800-56186600	Enhancers	HSMMtube	muscle
20	chr1:56182000-56186400	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr1:56182000-56186400	Enhancers	HMEC	breast
22	chr1:56183000-56186200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr1:56183000-56186200	Enhancers	Psoas Muscle	Psoas
24	chr1:56183200-56187800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr1:56183200-56187800	Enhancers	Ovary	ovary
26	chr1:56183400-56186200	Enhancers	Adipose Nuclei	Adipose
27	chr1:56183600-56186200	Enhancers	Stomach Smooth Muscle	stomach
28	chr1:56183600-56186400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr1:56183600-56186400	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr1:56183800-56186400	Enhancers	H1 Cell Line	embryonic stem cell
31	chr1:56183800-56186400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr1:56183800-56186800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr1:56184000-56186400	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr1:56184000-56186400	Enhancers	A549	lung
35	chr1:56184000-56186600	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr1:56184200-56186600	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr1:56184400-56186200	Enhancers	H9 Cell Line	embryonic stem cell
38	chr1:56184600-56186400	Enhancers	Rectal Smooth Muscle	rectum
39	chr1:56184800-56186200	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr1:56185200-56186400	Enhancers	Hela-S3	cervix
41	chr1:56185200-56190400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr1:56185200-56191800	Weak transcription	Aorta	Aorta
43	chr1:56185400-56186800	Enhancers	NHDF-Ad	bronchial
44	chr1:56185600-56186400	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr1:56185800-56186200	Enhancers	Pancreas	Pancrea
46	chr1:56185800-56186400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr1:56185800-56186400	Enhancers	Right Atrium	heart
48	chr1:56185800-56186600	Enhancers	Brain Substantia Nigra	brain
49	chr1:56185800-56187000	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr1:56186000-56186200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links