Variant report

Variant	rs2671237
Chromosome Location	chr1:56178813-56178814
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56176000..56178931-chr1:56179257..56182053,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1165478	0.99[EUR][1000 genomes]
rs1165480	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs1165481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1165482	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1165483	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1165484	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs1165485	0.80[CEU][hapmap];0.92[EUR][1000 genomes]
rs1165486	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs1183736	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs1514141	0.99[EUR][1000 genomes]
rs1514142	0.94[CEU][hapmap];0.99[EUR][1000 genomes]
rs1514146	0.90[EUR][1000 genomes]
rs1877716	0.98[EUR][1000 genomes]
rs1877717	0.99[EUR][1000 genomes]
rs2255776	0.98[EUR][1000 genomes]
rs2671226	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs2671228	0.96[EUR][1000 genomes]
rs2671229	0.86[EUR][1000 genomes]
rs2671231	0.88[EUR][1000 genomes]
rs2671232	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs2671233	0.99[EUR][1000 genomes]
rs2671234	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs2671239	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs2671240	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2671241	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2671242	0.89[EUR][1000 genomes]
rs2671245	0.92[CEU][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes]
rs2767503	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs2767504	0.98[EUR][1000 genomes]
rs2767507	0.97[EUR][1000 genomes]
rs2767508	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2767509	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2767510	0.89[EUR][1000 genomes]
rs2767513	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs2767514	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs2767515	0.92[CEU][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs2767516	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs2767518	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs2767519	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2819472	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2819473	0.92[CEU][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs2819474	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs2819476	0.98[EUR][1000 genomes]
rs2819477	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2819479	0.88[EUR][1000 genomes]
rs2819482	0.99[EUR][1000 genomes]
rs2819487	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs2819488	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs2819489	0.99[EUR][1000 genomes]
rs2819490	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs2819491	0.99[EUR][1000 genomes]
rs748284	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2671237	ZYG11A	cis	parietal	SCAN
rs2671237	PPAP2B	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56166400-56182200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:56167800-56179000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56167800-56181000	Weak transcription	HSMM	muscle
4	chr1:56168000-56180600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:56170200-56181000	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:56174000-56186000	Weak transcription	Spleen	Spleen
7	chr1:56174200-56183000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr1:56177800-56187800	Enhancers	Placenta	Placenta
9	chr1:56178400-56180000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:56178400-56181600	Weak transcription	Fetal Stomach	stomach
11	chr1:56178800-56179200	Enhancers	Psoas Muscle	Psoas
12	chr1:56178800-56180000	Weak transcription	NHLF	lung
13	chr1:56178800-56181800	Weak transcription	Fetal Lung	lung
14	chr1:56178800-56183400	Weak transcription	Fetal Kidney	kidney

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