Variant report

Variant	rs2671226
Chromosome Location	chr1:56187860-56187861
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56183975..56186829-chr1:56187423..56190169,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1165478	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1165480	0.82[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs1165481	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs1165482	0.93[EUR][1000 genomes]
rs1165483	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs1165484	0.84[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1165485	0.95[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1165486	0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1183736	0.95[CEU][hapmap];0.91[CHB][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1514141	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1514142	0.89[CEU][hapmap];0.90[CHB][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1514146	0.84[EUR][1000 genomes]
rs1877716	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1877717	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2255776	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2671228	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2671231	0.82[EUR][1000 genomes]
rs2671232	0.96[CEU][hapmap];0.91[CHB][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2671233	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2671234	0.95[CEU][hapmap];0.91[CHB][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2671237	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs2671239	0.95[CEU][hapmap];0.82[CHB][hapmap];0.92[EUR][1000 genomes]
rs2671240	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2671241	0.96[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2671242	0.83[EUR][1000 genomes]
rs2671245	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs2767503	0.95[CEU][hapmap];0.82[CHB][hapmap];0.92[EUR][1000 genomes]
rs2767504	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2767507	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2767508	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2767509	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2767510	0.83[EUR][1000 genomes]
rs2767513	0.96[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2767514	0.96[CEU][hapmap];0.91[CHB][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2767515	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs2767516	0.96[CEU][hapmap];0.90[CHB][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2767518	0.96[CEU][hapmap];0.91[CHB][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2767519	0.96[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2819472	0.95[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap]
rs2819473	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs2819474	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs2819476	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2819477	0.96[CEU][hapmap];0.91[CHB][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2819479	0.82[EUR][1000 genomes]
rs2819482	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2819487	0.96[CEU][hapmap];0.91[CHB][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2819488	0.96[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2819489	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2819490	0.96[CEU][hapmap];0.91[CHB][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2819491	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs748284	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9436520	0.82[CHB][hapmap]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56180000-56190600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr1:56185200-56190400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:56185200-56191800	Weak transcription	Aorta	Aorta
4	chr1:56186400-56188600	Weak transcription	HMEC	breast
5	chr1:56186400-56188600	Weak transcription	NH-A	brain
6	chr1:56186400-56188600	Weak transcription	NHLF	lung
7	chr1:56186400-56190200	Weak transcription	Hela-S3	cervix
8	chr1:56186400-56190600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:56186400-56192200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:56186400-56207600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr1:56186600-56188600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:56186600-56188600	Weak transcription	Osteobl	bone
13	chr1:56186600-56188800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:56186600-56189400	Weak transcription	HSMMtube	muscle
15	chr1:56186600-56192200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr1:56186800-56188600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:56186800-56188600	Weak transcription	NHDF-Ad	bronchial
18	chr1:56186800-56189400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:56186800-56192400	Weak transcription	Fetal Stomach	stomach
20	chr1:56187200-56189000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:56187600-56191200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:56187800-56188600	Weak transcription	Ovary	ovary
23	chr1:56187800-56190600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr1:56187800-56192000	Weak transcription	Fetal Muscle Leg	muscle
25	chr1:56187800-56192400	Enhancers	HSMM	muscle

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