Variant report

Variant	rs9436520
Chromosome Location	chr1:56137245-56137246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56137224..56139616-chr1:56156746..56159633,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11206659	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1165478	0.82[ASN][1000 genomes]
rs1165480	0.92[JPT][hapmap]
rs1165484	0.93[JPT][hapmap]
rs1165485	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs1165486	0.86[CHB][hapmap];0.94[CHD][hapmap];0.93[JPT][hapmap]
rs1182821	0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1183736	0.90[CHB][hapmap];0.94[CHD][hapmap];0.93[JPT][hapmap]
rs12036264	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12407237	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1514141	0.83[ASN][1000 genomes]
rs1514142	0.90[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs1877716	0.84[ASN][1000 genomes]
rs1877717	0.84[ASN][1000 genomes]
rs1955318	0.92[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap]
rs2255776	0.84[ASN][1000 genomes]
rs2671226	0.82[CHB][hapmap]
rs2671227	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2671228	0.83[ASN][1000 genomes]
rs2671232	0.90[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2671233	0.84[ASN][1000 genomes]
rs2671234	0.90[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2671238	0.92[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2671239	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2671240	0.90[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2671241	0.90[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2671245	0.83[CHD][hapmap];0.93[JPT][hapmap]
rs2767502	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2767503	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2767504	0.82[ASN][1000 genomes]
rs2767507	0.83[ASN][1000 genomes]
rs2767508	0.90[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs2767509	0.90[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2767513	0.90[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2767514	0.90[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2767515	0.83[CHD][hapmap];0.93[JPT][hapmap]
rs2767516	0.90[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2767518	0.90[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2767519	0.95[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2819472	0.89[CHB][hapmap];0.92[JPT][hapmap]
rs2819473	0.83[CHD][hapmap];0.93[JPT][hapmap]
rs2819474	0.93[JPT][hapmap]
rs2819476	0.82[ASN][1000 genomes]
rs2819477	0.90[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2819482	0.84[ASN][1000 genomes]
rs2819487	0.90[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2819488	0.90[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2819489	0.84[ASN][1000 genomes]
rs2819490	0.90[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2819491	0.84[ASN][1000 genomes]
rs3914413	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4367813	0.92[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6667315	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs748284	0.90[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs9326036	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9436521	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9436522	0.95[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9436524	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9436525	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9436526	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9436981	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9436982	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436984	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526148	chr1:56101597-56146450	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9436520	YIPF1	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56134600-56137600	Enhancers	Fetal Lung	lung
2	chr1:56134600-56137600	Enhancers	NHDF-Ad	bronchial
3	chr1:56135600-56139000	Weak transcription	Fetal Heart	heart
4	chr1:56135800-56138600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:56135800-56139000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:56135800-56162000	Weak transcription	Aorta	Aorta
7	chr1:56136800-56137400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:56136800-56137600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:56136800-56139800	Weak transcription	HSMM	muscle

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