Variant report

Variant	rs6667315
Chromosome Location	chr1:56138345-56138346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56137224..56139616-chr1:56156746..56159633,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11206659	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1165478	0.82[ASN][1000 genomes]
rs1182821	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12036264	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12407237	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1514141	0.83[ASN][1000 genomes]
rs1514142	0.83[ASN][1000 genomes]
rs1877716	0.84[ASN][1000 genomes]
rs1877717	0.84[ASN][1000 genomes]
rs2255776	0.84[ASN][1000 genomes]
rs2671227	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2671228	0.83[ASN][1000 genomes]
rs2671232	0.84[ASN][1000 genomes]
rs2671233	0.84[ASN][1000 genomes]
rs2671234	0.82[ASN][1000 genomes]
rs2671238	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2671239	0.91[ASN][1000 genomes]
rs2671240	0.84[ASN][1000 genomes]
rs2671241	0.84[ASN][1000 genomes]
rs2767502	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2767503	0.91[ASN][1000 genomes]
rs2767504	0.82[ASN][1000 genomes]
rs2767507	0.83[ASN][1000 genomes]
rs2767508	0.83[ASN][1000 genomes]
rs2767509	0.84[ASN][1000 genomes]
rs2767513	0.84[ASN][1000 genomes]
rs2767514	0.84[ASN][1000 genomes]
rs2767516	0.82[ASN][1000 genomes]
rs2767518	0.84[ASN][1000 genomes]
rs2767519	0.84[ASN][1000 genomes]
rs2819476	0.82[ASN][1000 genomes]
rs2819477	0.82[ASN][1000 genomes]
rs2819482	0.84[ASN][1000 genomes]
rs2819487	0.84[ASN][1000 genomes]
rs2819488	0.84[ASN][1000 genomes]
rs2819489	0.84[ASN][1000 genomes]
rs2819490	0.84[ASN][1000 genomes]
rs2819491	0.84[ASN][1000 genomes]
rs3914413	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4367813	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs748284	0.81[ASN][1000 genomes]
rs9326036	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9436520	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436521	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9436522	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9436524	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9436525	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9436526	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9436981	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9436982	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436984	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526148	chr1:56101597-56146450	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56135600-56139000	Weak transcription	Fetal Heart	heart
2	chr1:56135800-56138600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56135800-56139000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:56135800-56162000	Weak transcription	Aorta	Aorta
5	chr1:56136800-56139800	Weak transcription	HSMM	muscle
6	chr1:56137600-56139400	Weak transcription	Fetal Lung	lung
7	chr1:56138000-56155600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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