Variant report

Variant	rs628161
Chromosome Location	chr11:85830501-85830502
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs490507	0.84[EUR][1000 genomes]
rs621942	0.84[EUR][1000 genomes]
rs622876	0.84[EUR][1000 genomes]
rs636848	0.84[EUR][1000 genomes]
rs646260	0.98[ASN][1000 genomes]
rs7117280	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7926460	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85824800-85837600	Weak transcription	Brain Angular Gyrus	brain
2	chr11:85827400-85830600	Enhancers	Rectal Smooth Muscle	rectum
3	chr11:85827400-85832800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:85828000-85834200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr11:85828600-85832200	Weak transcription	Placenta	Placenta
6	chr11:85829000-85830600	Enhancers	Colon Smooth Muscle	Colon
7	chr11:85829200-85831600	Enhancers	Fetal Kidney	kidney
8	chr11:85829200-85832400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:85829400-85830600	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr11:85829400-85834200	Weak transcription	A549	lung
11	chr11:85829600-85831000	Weak transcription	Fetal Intestine Large	intestine
12	chr11:85829600-85831800	Weak transcription	Fetal Intestine Small	intestine
13	chr11:85829600-85831800	Weak transcription	HepG2	liver
14	chr11:85829800-85834000	Weak transcription	K562	blood
15	chr11:85830000-85831600	Weak transcription	Liver	Liver
16	chr11:85830200-85830600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:85830400-85830600	Enhancers	Brain Anterior Caudate	brain
18	chr11:85830400-85830600	Enhancers	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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