Variant report

Variant	rs646260
Chromosome Location	chr11:85824288-85824289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1941375	1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap]
rs490507	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs583463	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs588992	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs615887	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs621942	0.83[CHB][hapmap];0.88[JPT][hapmap];0.95[LWK][hapmap]
rs622110	0.92[CHB][hapmap];0.82[JPT][hapmap];0.81[LWK][hapmap]
rs628161	0.98[ASN][1000 genomes]
rs636848	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6592272	0.92[CHB][hapmap];0.88[CHD][hapmap];0.88[JPT][hapmap]
rs664596	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs669336	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs681041	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs7117280	0.88[ASN][1000 genomes]
rs7926460	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs646260	GRM5	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85813600-85826600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:85824200-85824800	Flanking Active TSS	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links