Variant report

Variant	rs631497
Chromosome Location	chr2:141123012-141123013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10496844	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs10803583	0.83[YRI][hapmap]
rs11889291	0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11891957	0.82[YRI][hapmap]
rs11902952	0.82[YRI][hapmap]
rs1607389	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs16843904	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs581958	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs603914	0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs633689	0.83[YRI][hapmap]
rs654817	1.00[EUR][1000 genomes]
rs656191	0.91[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs658631	0.83[YRI][hapmap]
rs73964219	1.00[AMR][1000 genomes]
rs825431	0.94[YRI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv459496	chr2:141111125-141151319	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv583189	chr2:141111125-141151319	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141118400-141124200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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