Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10192329	0.88[YRI][hapmap]
rs10496844	0.88[YRI][hapmap]
rs11889291	0.88[YRI][hapmap]
rs11891957	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11896333	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12990666	0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs13027596	0.88[CEU][hapmap]
rs13034087	0.88[CEU][hapmap]
rs13034290	0.88[CEU][hapmap]
rs13034302	0.88[CEU][hapmap]
rs1607389	0.88[YRI][hapmap]
rs16843791	0.88[CEU][hapmap]
rs16843793	0.88[CEU][hapmap]
rs16843862	0.87[CEU][hapmap]
rs16843878	0.88[CEU][hapmap]
rs16843904	0.88[YRI][hapmap]
rs16856002	0.88[CEU][hapmap]
rs17386407	0.88[CEU][hapmap]
rs17478280	0.84[EUR][1000 genomes]
rs36032596	0.89[EUR][1000 genomes]
rs4954834	0.88[CEU][hapmap]
rs4954838	0.82[EUR][1000 genomes]
rs581958	0.88[YRI][hapmap]
rs631497	0.82[YRI][hapmap]
rs6727869	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs6730266	0.88[YRI][hapmap]
rs6744482	0.82[YRI][hapmap]
rs6759382	0.94[YRI][hapmap]
rs72898282	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7558421	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7607749	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875186	chr2:141123496-141217244	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2756334	chr2:141166521-141285622	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
4	nsv875187	chr2:141170340-141237995	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
5	nsv875188	chr2:141207018-141253408	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
6	nsv875189	chr2:141207018-141258419	Active TSS Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141211600-141214000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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