Variant report

Variant	rs4954834
Chromosome Location	chr2:141173769-141173770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11682825	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs11883474	0.89[CEU][hapmap]
rs11891957	0.88[CEU][hapmap]
rs11902952	0.88[CEU][hapmap]
rs12986472	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs12986741	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12992207	0.95[EUR][1000 genomes]
rs12992843	0.95[EUR][1000 genomes]
rs12992848	0.95[EUR][1000 genomes]
rs12993034	0.95[EUR][1000 genomes]
rs13004456	0.86[EUR][1000 genomes]
rs13007077	0.81[AMR][1000 genomes]
rs13013026	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs13013406	0.87[EUR][1000 genomes]
rs13027596	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs13028094	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs13028898	0.87[CEU][hapmap];0.95[EUR][1000 genomes]
rs13030387	0.87[EUR][1000 genomes]
rs13030604	0.87[EUR][1000 genomes]
rs13034087	1.00[CEU][hapmap]
rs13034290	1.00[CEU][hapmap]
rs13034293	0.88[CEU][hapmap];0.95[EUR][1000 genomes]
rs13034302	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1518436	0.80[CEU][hapmap];0.86[AMR][1000 genomes]
rs1518447	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs1568255	0.82[YRI][hapmap]
rs16843764	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs16843791	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs16843793	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs16843798	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs16843808	0.80[CEU][hapmap]
rs16843815	0.88[CEU][hapmap]
rs16843862	1.00[CEU][hapmap]
rs16843875	0.88[CEU][hapmap];0.95[EUR][1000 genomes]
rs16843878	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs16843884	0.95[EUR][1000 genomes]
rs16843894	0.95[EUR][1000 genomes]
rs16856002	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17386407	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs34106853	0.93[AMR][1000 genomes]
rs34263547	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34719523	0.95[EUR][1000 genomes]
rs34761163	0.95[EUR][1000 genomes]
rs35048746	0.95[EUR][1000 genomes]
rs35069826	0.95[EUR][1000 genomes]
rs35458973	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35540108	0.88[EUR][1000 genomes]
rs35681677	0.95[EUR][1000 genomes]
rs36034993	0.85[EUR][1000 genomes]
rs55827330	0.95[EUR][1000 genomes]
rs60818438	0.90[AMR][1000 genomes]
rs6727869	0.88[CEU][hapmap]
rs67772157	0.85[EUR][1000 genomes]
rs72898252	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72898269	0.86[AMR][1000 genomes]
rs72898274	0.86[AMR][1000 genomes]
rs7571680	0.90[AMR][1000 genomes]
rs7581105	0.95[EUR][1000 genomes]
rs7581215	0.88[CEU][hapmap];0.95[EUR][1000 genomes]
rs7586024	0.94[EUR][1000 genomes]
rs7591861	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7597274	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs7597354	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs7599200	0.95[EUR][1000 genomes]
rs7607749	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7609072	0.89[CEU][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv875186	chr2:141123496-141217244	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv2756334	chr2:141166521-141285622	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
5	nsv875187	chr2:141170340-141237995	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141173400-141173800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:141173400-141173800	ZNF genes & repeats	Pancreas	Pancrea

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