Variant report

Variant	rs16843815
Chromosome Location	chr2:141098372-141098373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:141096050..141098665-chr2:141100590..141102243,2	MCF-7	breast:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10928744	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11682825	0.92[AMR][1000 genomes]
rs11883474	0.85[GIH][hapmap];0.81[TSI][hapmap]
rs12986472	0.84[AMR][1000 genomes]
rs12992207	0.84[AMR][1000 genomes]
rs12992843	0.84[AMR][1000 genomes]
rs12992848	0.84[AMR][1000 genomes]
rs12993034	0.84[AMR][1000 genomes]
rs12997262	1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs13004456	0.92[AMR][1000 genomes]
rs13007077	0.82[EUR][1000 genomes]
rs13012031	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13013026	0.84[AMR][1000 genomes]
rs13019002	0.87[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs13027596	0.88[CEU][hapmap];0.84[AMR][1000 genomes]
rs13028094	0.90[TSI][hapmap];0.84[AMR][1000 genomes]
rs13028624	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13028633	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13028898	0.84[AMR][1000 genomes]
rs13034087	0.88[CEU][hapmap];0.85[GIH][hapmap];0.90[TSI][hapmap]
rs13034290	0.88[CEU][hapmap];0.85[GIH][hapmap];0.90[TSI][hapmap]
rs13034293	0.84[AMR][1000 genomes]
rs13034302	0.88[CEU][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes]
rs1401113	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1401116	1.00[CHB][hapmap]
rs1518436	1.00[CEU][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes]
rs1518447	0.90[TSI][hapmap];0.84[AMR][1000 genomes]
rs1568255	1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs1568256	1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap]
rs16843764	0.85[GIH][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes]
rs16843781	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843782	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843788	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs16843791	0.88[CEU][hapmap];0.92[AMR][1000 genomes]
rs16843793	0.88[CEU][hapmap];0.92[AMR][1000 genomes]
rs16843798	0.92[AMR][1000 genomes]
rs16843808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16843835	1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];1.00[ASN][1000 genomes]
rs16843862	0.87[CEU][hapmap]
rs16843864	1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs16843878	0.88[CEU][hapmap]
rs16843881	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16843884	0.84[AMR][1000 genomes]
rs16843886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16843894	0.84[AMR][1000 genomes]
rs16843900	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.91[ASN][1000 genomes]
rs16856002	0.88[CEU][hapmap];0.92[AMR][1000 genomes]
rs17386407	0.88[CEU][hapmap];0.85[GIH][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes]
rs34106853	0.87[EUR][1000 genomes]
rs34468781	0.91[ASN][1000 genomes]
rs34719523	0.84[AMR][1000 genomes]
rs34761163	0.84[AMR][1000 genomes]
rs34860393	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34965887	0.91[ASN][1000 genomes]
rs35048746	0.84[AMR][1000 genomes]
rs35069826	0.84[AMR][1000 genomes]
rs35155048	0.91[ASN][1000 genomes]
rs35540108	0.80[AMR][1000 genomes]
rs35681677	0.84[AMR][1000 genomes]
rs36034993	0.92[AMR][1000 genomes]
rs4954830	0.81[TSI][hapmap]
rs4954834	0.88[CEU][hapmap]
rs55827330	0.84[AMR][1000 genomes]
rs60818438	0.87[EUR][1000 genomes]
rs66557721	0.91[ASN][1000 genomes]
rs6740002	0.84[AMR][1000 genomes]
rs6741490	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs67772157	0.92[AMR][1000 genomes]
rs72894099	1.00[ASN][1000 genomes]
rs72898269	0.88[EUR][1000 genomes]
rs72898274	0.88[EUR][1000 genomes]
rs7571680	0.88[EUR][1000 genomes]
rs7581105	0.84[AMR][1000 genomes]
rs7581215	0.84[AMR][1000 genomes]
rs7586024	0.84[AMR][1000 genomes]
rs7597274	0.90[TSI][hapmap];0.84[AMR][1000 genomes]
rs7597354	0.90[TSI][hapmap];0.84[AMR][1000 genomes]
rs7599200	0.84[AMR][1000 genomes]
rs7606534	1.00[CHB][hapmap]
rs7607749	0.88[CEU][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes]
rs7609072	0.84[AMR][1000 genomes]
rs825432	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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