Variant report

Variant	rs13012031
Chromosome Location	chr2:141107023-141107024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11682825	0.84[AMR][1000 genomes]
rs12986472	0.92[AMR][1000 genomes]
rs12986741	0.84[AMR][1000 genomes]
rs12992207	0.92[AMR][1000 genomes]
rs12992843	0.92[AMR][1000 genomes]
rs12992848	0.92[AMR][1000 genomes]
rs12993034	0.92[AMR][1000 genomes]
rs13004456	0.84[AMR][1000 genomes]
rs13007077	0.87[EUR][1000 genomes]
rs13013026	0.92[AMR][1000 genomes]
rs13013406	0.84[AMR][1000 genomes]
rs13027596	0.92[AMR][1000 genomes]
rs13028094	0.92[AMR][1000 genomes]
rs13028624	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13028898	0.92[AMR][1000 genomes]
rs13030387	0.84[AMR][1000 genomes]
rs13030604	0.84[AMR][1000 genomes]
rs13034293	0.92[AMR][1000 genomes]
rs13034302	0.92[AMR][1000 genomes]
rs1518436	0.94[EUR][1000 genomes]
rs1518447	0.92[AMR][1000 genomes]
rs16843764	0.84[AMR][1000 genomes]
rs16843781	1.00[ASN][1000 genomes]
rs16843782	1.00[ASN][1000 genomes]
rs16843791	0.84[AMR][1000 genomes]
rs16843793	0.84[AMR][1000 genomes]
rs16843798	0.84[AMR][1000 genomes]
rs16843835	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843875	0.88[AMR][1000 genomes]
rs16843878	0.84[AMR][1000 genomes]
rs16843881	0.91[ASN][1000 genomes]
rs16843884	0.92[AMR][1000 genomes]
rs16843886	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16843894	0.92[AMR][1000 genomes]
rs16843900	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16856002	0.84[AMR][1000 genomes]
rs17386407	0.84[AMR][1000 genomes]
rs34106853	0.92[EUR][1000 genomes]
rs34263547	0.80[AMR][1000 genomes]
rs34468781	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34719523	0.92[AMR][1000 genomes]
rs34761163	0.92[AMR][1000 genomes]
rs34860393	1.00[ASN][1000 genomes]
rs34965887	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35048746	0.92[AMR][1000 genomes]
rs35069826	0.92[AMR][1000 genomes]
rs35155048	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35540108	0.88[AMR][1000 genomes]
rs35681677	0.92[AMR][1000 genomes]
rs36034993	0.84[AMR][1000 genomes]
rs4954830	0.88[AMR][1000 genomes]
rs55827330	0.92[AMR][1000 genomes]
rs60818438	0.92[EUR][1000 genomes]
rs66557721	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6741490	1.00[ASN][1000 genomes]
rs67772157	0.84[AMR][1000 genomes]
rs72894099	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898269	0.94[EUR][1000 genomes]
rs72898274	0.94[EUR][1000 genomes]
rs7571680	0.94[EUR][1000 genomes]
rs7581105	0.92[AMR][1000 genomes]
rs7581215	0.92[AMR][1000 genomes]
rs7586024	0.92[AMR][1000 genomes]
rs7597274	0.92[AMR][1000 genomes]
rs7597354	0.92[AMR][1000 genomes]
rs7599200	0.92[AMR][1000 genomes]
rs7607749	0.92[AMR][1000 genomes]
rs7609072	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141105400-141107600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr2:141106200-141113600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:141106400-141107400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr2:141106800-141112200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:141106800-141113000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr2:141107000-141111200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:141107000-141111400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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