Variant report

Variant	rs13028094
Chromosome Location	chr2:141141060-141141061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs11682825	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11883474	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs12986472	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12986741	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12992207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12992843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12992848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12993034	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12997262	1.00[MEX][hapmap];0.80[TSI][hapmap]
rs13004456	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13012031	0.92[AMR][1000 genomes]
rs13013026	1.00[CEU][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13013406	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13016851	0.80[YRI][hapmap];0.85[AMR][1000 genomes]
rs13019002	0.88[CEU][hapmap]
rs13027596	0.89[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13028624	0.81[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs13028898	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13030387	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13030604	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13034087	0.89[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap]
rs13034290	0.89[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap]
rs13034293	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13034302	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1518436	0.90[TSI][hapmap]
rs1518447	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1568255	0.88[GIH][hapmap]
rs1568256	0.88[GIH][hapmap];1.00[MEX][hapmap]
rs1607390	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16843764	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16843782	1.00[MEX][hapmap]
rs16843791	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16843793	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16843798	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16843815	0.90[TSI][hapmap]
rs16843830	0.80[AMR][1000 genomes]
rs16843835	0.88[GIH][hapmap];1.00[MEX][hapmap]
rs16843862	0.88[CEU][hapmap];0.87[YRI][hapmap]
rs16843864	0.88[GIH][hapmap];1.00[MEX][hapmap]
rs16843875	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16843878	0.89[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16843884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16843894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16843900	0.88[GIH][hapmap];1.00[MEX][hapmap]
rs16856002	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17386407	0.89[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2176548	1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs2380790	1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34263547	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34719523	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34761163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35048746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35069826	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35424079	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35458973	0.97[EUR][1000 genomes]
rs35540108	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35681677	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36034993	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4954671	1.00[MEX][hapmap]
rs4954830	1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.96[AMR][1000 genomes]
rs4954834	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs55827330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6740002	0.82[AMR][1000 genomes]
rs67641696	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67772157	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72898252	0.97[EUR][1000 genomes]
rs7581105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7581215	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7586024	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7591861	0.97[EUR][1000 genomes]
rs7592518	1.00[GIH][hapmap];0.82[TSI][hapmap]
rs7597274	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7597354	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7599200	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7607749	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7609072	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv459496	chr2:141111125-141151319	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv583189	chr2:141111125-141151319	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv875186	chr2:141123496-141217244	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv459507	chr2:141130097-141170340	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv583190	chr2:141130097-141170340	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv470488	chr2:141133405-141170339	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141133200-141143200	Weak transcription	Brain Substantia Nigra	brain
2	chr2:141135000-141142600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:141140200-141141200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:141141000-141141800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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