Variant report
| Variant | rs4954671 |
|---|---|
| Chromosome Location | chr2:140978431-140978432 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-LRP1B-5 | chr2:140978153-140979054 | NONHSAT074701 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10928744 | 1.00[CEU][hapmap] |
| rs11883474 | 1.00[MEX][hapmap] |
| rs12997262 | 1.00[MEX][hapmap] |
| rs13028094 | 1.00[MEX][hapmap] |
| rs13034302 | 1.00[MEX][hapmap] |
| rs1518447 | 1.00[MEX][hapmap] |
| rs1568256 | 1.00[MEX][hapmap] |
| rs16843764 | 1.00[MEX][hapmap] |
| rs16843782 | 1.00[MEX][hapmap] |
| rs16843835 | 1.00[MEX][hapmap] |
| rs16843864 | 1.00[MEX][hapmap] |
| rs16843900 | 1.00[MEX][hapmap] |
| rs2176548 | 1.00[MEX][hapmap] |
| rs2380790 | 1.00[MEX][hapmap] |
| rs36095075 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs4954830 | 1.00[MEX][hapmap] |
| rs7597274 | 1.00[MEX][hapmap] |
| rs7597354 | 1.00[MEX][hapmap] |
| rs7607749 | 1.00[MEX][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv875180 | chr2:140735843-141004529 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv583188 | chr2:140891843-140982918 | Enhancers Active TSS Weak transcription | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv834392 | chr2:140920900-141086613 | Flanking Active TSS Weak transcription Enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv431757 | chr2:140931289-141098020 | Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 5 | esv2754491 | chr2:140947477-141026986 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | n/a |
| 6 | nsv979131 | chr2:140974668-140982713 | Inactive region | TF binding regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
