Variant report

Variant	rs2380790
Chromosome Location	chr2:141156836-141156837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11883474	0.87[GIH][hapmap];1.00[MEX][hapmap]
rs12986472	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12992207	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12992843	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12992848	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12993034	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12997262	1.00[MEX][hapmap];0.80[MKK][hapmap];0.95[TSI][hapmap]
rs13013026	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13016851	0.91[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13027596	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13028094	1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13028633	0.84[CEU][hapmap]
rs13028898	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13034087	0.87[GIH][hapmap];0.86[TSI][hapmap]
rs13034290	0.87[GIH][hapmap];0.85[TSI][hapmap]
rs13034293	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13034302	1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes]
rs1518447	1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.91[YRI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1568255	0.88[GIH][hapmap];0.83[TSI][hapmap]
rs1568256	0.92[ASW][hapmap];0.88[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap]
rs1607390	0.91[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16843764	0.87[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs16843781	0.82[AMR][1000 genomes]
rs16843782	1.00[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes]
rs16843830	1.00[CEU][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16843835	0.84[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes]
rs16843864	0.84[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap]
rs16843875	0.80[EUR][1000 genomes]
rs16843878	0.80[EUR][1000 genomes]
rs16843884	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16843886	0.84[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs16843894	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16843900	0.92[ASW][hapmap];0.88[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17386407	0.87[GIH][hapmap];0.85[TSI][hapmap]
rs2176548	0.92[ASW][hapmap];0.91[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs34468781	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs34719523	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34761163	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34860393	0.82[AMR][1000 genomes]
rs34965887	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs35048746	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35069826	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35155048	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs35424079	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35681677	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4954671	1.00[MEX][hapmap]
rs4954830	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs55827330	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs66557721	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs67641696	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72894099	0.89[AMR][1000 genomes]
rs7581105	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7581215	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7586024	0.82[AMR][1000 genomes]
rs7592518	0.91[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap]
rs7597274	1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7597354	1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes]
rs7599200	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7607749	1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes]
rs7609072	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs825432	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv875186	chr2:141123496-141217244	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv459507	chr2:141130097-141170340	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv583190	chr2:141130097-141170340	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv470488	chr2:141133405-141170339	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141152200-141157600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:141153200-141159000	Weak transcription	Fetal Intestine Large	intestine

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