Variant report

Variant	rs16843830
Chromosome Location	chr2:141109260-141109261
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs12986472	0.80[AMR][1000 genomes]
rs12992207	0.80[AMR][1000 genomes]
rs12992843	0.80[AMR][1000 genomes]
rs12992848	0.80[AMR][1000 genomes]
rs12993034	0.80[AMR][1000 genomes]
rs12997262	0.91[YRI][hapmap]
rs13013026	0.80[AMR][1000 genomes]
rs13016851	0.91[CEU][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13027596	0.80[AMR][1000 genomes]
rs13028094	0.80[AMR][1000 genomes]
rs13028633	0.84[CEU][hapmap];0.85[YRI][hapmap]
rs13028898	0.80[AMR][1000 genomes]
rs13034293	0.80[AMR][1000 genomes]
rs13034302	0.80[AMR][1000 genomes]
rs1518447	0.80[AMR][1000 genomes]
rs1568256	0.82[YRI][hapmap]
rs1607390	0.91[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16843781	0.82[AMR][1000 genomes]
rs16843782	0.82[AMR][1000 genomes]
rs16843835	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs16843862	0.80[YRI][hapmap]
rs16843864	0.84[CEU][hapmap];0.84[YRI][hapmap]
rs16843884	0.80[AMR][1000 genomes]
rs16843886	0.84[CEU][hapmap]
rs16843894	0.80[AMR][1000 genomes]
rs16843900	0.82[YRI][hapmap];0.89[AMR][1000 genomes]
rs2176548	0.91[CEU][hapmap];0.82[YRI][hapmap]
rs2380790	1.00[CEU][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34468781	0.89[AMR][1000 genomes]
rs34719523	0.80[AMR][1000 genomes]
rs34761163	0.80[AMR][1000 genomes]
rs34860393	0.82[AMR][1000 genomes]
rs34965887	0.89[AMR][1000 genomes]
rs35048746	0.80[AMR][1000 genomes]
rs35069826	0.80[AMR][1000 genomes]
rs35155048	0.89[AMR][1000 genomes]
rs35424079	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35681677	0.80[AMR][1000 genomes]
rs4954830	0.82[YRI][hapmap]
rs55827330	0.80[AMR][1000 genomes]
rs66557721	0.89[AMR][1000 genomes]
rs67641696	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72894099	0.89[AMR][1000 genomes]
rs7581105	0.80[AMR][1000 genomes]
rs7581215	0.80[AMR][1000 genomes]
rs7586024	0.80[AMR][1000 genomes]
rs7592518	0.91[CEU][hapmap]
rs7597274	0.80[AMR][1000 genomes]
rs7597354	0.80[AMR][1000 genomes]
rs7599200	0.80[AMR][1000 genomes]
rs7607749	0.80[AMR][1000 genomes]
rs7609072	0.80[AMR][1000 genomes]
rs825432	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141106200-141113600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:141106800-141112200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:141106800-141113000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr2:141107000-141111200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:141107000-141111400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:141107400-141113400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:141107600-141111600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr2:141109200-141109800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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