Variant report

Variant	rs7592518
Chromosome Location	chr2:141167034-141167035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11883474	0.87[GIH][hapmap]
rs12986472	0.80[EUR][1000 genomes]
rs12992207	0.80[EUR][1000 genomes]
rs12992843	0.80[EUR][1000 genomes]
rs12992848	0.80[EUR][1000 genomes]
rs12993034	0.80[EUR][1000 genomes]
rs12997262	0.85[CEU][hapmap];0.82[MKK][hapmap];0.95[TSI][hapmap]
rs13013026	0.80[EUR][1000 genomes]
rs13016851	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13027596	0.80[EUR][1000 genomes]
rs13028094	1.00[GIH][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes]
rs13028898	0.80[EUR][1000 genomes]
rs13034087	0.87[GIH][hapmap];0.82[TSI][hapmap]
rs13034290	0.87[GIH][hapmap];0.85[TSI][hapmap]
rs13034293	0.80[EUR][1000 genomes]
rs13034302	1.00[GIH][hapmap];0.82[TSI][hapmap]
rs1518436	0.82[MEX][hapmap]
rs1518447	1.00[GIH][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes]
rs1568255	0.93[ASW][hapmap];0.85[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.91[YRI][hapmap]
rs1568256	0.85[CEU][hapmap];0.88[GIH][hapmap];0.83[TSI][hapmap]
rs1607390	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16843764	0.87[GIH][hapmap];0.82[TSI][hapmap]
rs16843781	0.85[CEU][hapmap]
rs16843782	0.85[CEU][hapmap];0.91[TSI][hapmap]
rs16843788	0.85[CEU][hapmap]
rs16843830	0.91[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16843835	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs16843864	0.88[GIH][hapmap];0.82[MKK][hapmap];0.87[TSI][hapmap]
rs16843875	0.80[EUR][1000 genomes]
rs16843878	0.80[EUR][1000 genomes]
rs16843884	0.80[EUR][1000 genomes]
rs16843894	0.80[EUR][1000 genomes]
rs16843900	0.85[CEU][hapmap];0.88[GIH][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes]
rs17386407	0.87[GIH][hapmap];0.81[TSI][hapmap]
rs2176548	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap]
rs2380790	0.91[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34468781	0.83[AMR][1000 genomes]
rs34719523	0.80[EUR][1000 genomes]
rs34761163	0.80[EUR][1000 genomes]
rs34965887	0.83[AMR][1000 genomes]
rs35048746	0.80[EUR][1000 genomes]
rs35069826	0.80[EUR][1000 genomes]
rs35155048	0.83[AMR][1000 genomes]
rs35424079	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35458973	0.80[EUR][1000 genomes]
rs35681677	0.80[EUR][1000 genomes]
rs4954830	1.00[GIH][hapmap]
rs55827330	0.80[EUR][1000 genomes]
rs66557721	0.83[AMR][1000 genomes]
rs67641696	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72894099	0.83[AMR][1000 genomes]
rs72898252	0.80[EUR][1000 genomes]
rs7581105	0.80[EUR][1000 genomes]
rs7581215	0.80[EUR][1000 genomes]
rs7591861	0.80[EUR][1000 genomes]
rs7597274	1.00[GIH][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes]
rs7597354	1.00[GIH][hapmap];0.82[TSI][hapmap]
rs7599200	0.80[EUR][1000 genomes]
rs7607749	1.00[GIH][hapmap];0.82[TSI][hapmap]
rs7609072	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv875186	chr2:141123496-141217244	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv459507	chr2:141130097-141170340	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv583190	chr2:141130097-141170340	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv470488	chr2:141133405-141170339	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv2756334	chr2:141166521-141285622	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7592518	SUV420H2	trans	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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