Variant report

Variant	rs1607390
Chromosome Location	chr2:141158485-141158486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs12986472	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12992207	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12992843	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12992848	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12993034	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12997262	0.85[CEU][hapmap]
rs13013026	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13016851	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13027596	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13028094	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13028898	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13034293	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13034302	0.85[AMR][1000 genomes]
rs1518447	0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1568255	0.85[CEU][hapmap]
rs1568256	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs16843781	0.85[CEU][hapmap];0.86[AMR][1000 genomes]
rs16843782	0.85[CEU][hapmap];0.86[AMR][1000 genomes]
rs16843788	0.85[CEU][hapmap]
rs16843830	0.91[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16843835	0.86[AMR][1000 genomes]
rs16843875	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16843878	0.81[EUR][1000 genomes]
rs16843884	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16843886	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs16843894	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16843900	0.85[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2176548	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2380790	0.91[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34468781	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs34719523	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34761163	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34860393	0.86[AMR][1000 genomes]
rs34965887	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs35048746	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35069826	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35155048	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs35424079	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35540108	0.81[AMR][1000 genomes]
rs35681677	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4954830	0.81[AMR][1000 genomes]
rs55827330	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66557721	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs67641696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894099	0.93[AMR][1000 genomes]
rs7581105	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7581215	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7586024	0.85[AMR][1000 genomes]
rs7592518	1.00[CEU][hapmap]
rs7597274	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7597354	0.85[AMR][1000 genomes]
rs7599200	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7607749	0.85[AMR][1000 genomes]
rs7609072	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv875186	chr2:141123496-141217244	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv459507	chr2:141130097-141170340	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv583190	chr2:141130097-141170340	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv470488	chr2:141133405-141170339	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141153200-141159000	Weak transcription	Fetal Intestine Large	intestine
2	chr2:141157600-141159400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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