Variant report

Variant	rs16843835
Chromosome Location	chr2:141110440-141110441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10928744	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11883474	1.00[MEX][hapmap]
rs12992137	0.89[LWK][hapmap];0.85[YRI][hapmap]
rs12997262	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs13002228	0.91[LWK][hapmap];0.85[YRI][hapmap]
rs13012031	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13016851	0.86[AMR][1000 genomes]
rs13019002	1.00[JPT][hapmap]
rs13028094	0.88[GIH][hapmap];1.00[MEX][hapmap]
rs13028624	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13028633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13034302	0.88[GIH][hapmap];1.00[MEX][hapmap]
rs13407545	0.84[AFR][1000 genomes]
rs1401113	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1401116	1.00[CHB][hapmap]
rs1518447	0.88[GIH][hapmap];1.00[MEX][hapmap]
rs1518450	0.91[LWK][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes]
rs1568255	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs1568256	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap]
rs1607390	0.86[AMR][1000 genomes]
rs16843764	1.00[MEX][hapmap]
rs16843781	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843782	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843788	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs16843808	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16843815	1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs16843830	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs16843864	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs16843881	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16843886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16843900	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2046563	0.85[YRI][hapmap]
rs2176548	0.88[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs2380790	0.84[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes]
rs34468781	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34860393	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34965887	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35155048	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35424079	0.86[AMR][1000 genomes]
rs4954671	1.00[MEX][hapmap]
rs4954828	0.84[YRI][hapmap]
rs4954830	0.88[GIH][hapmap];1.00[MEX][hapmap]
rs6430898	0.85[YRI][hapmap]
rs66557721	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6741490	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs67641696	0.86[AMR][1000 genomes]
rs72894099	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7592518	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs7597274	0.88[GIH][hapmap];1.00[MEX][hapmap]
rs7597354	0.88[GIH][hapmap];1.00[MEX][hapmap]
rs7606534	1.00[CHB][hapmap]
rs7607749	0.88[GIH][hapmap];1.00[MEX][hapmap]
rs825432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141106200-141113600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:141106800-141112200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:141106800-141113000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr2:141107000-141111200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:141107000-141111400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:141107400-141113400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:141107600-141111600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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