Variant report

Variant	rs6741490
Chromosome Location	chr2:141090791-141090792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10928744	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12997262	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs13012031	1.00[ASN][1000 genomes]
rs13019002	1.00[JPT][hapmap]
rs13028624	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13028633	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1401113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1401116	1.00[CHB][hapmap]
rs1568255	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1568256	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16843374	1.00[GIH][hapmap]
rs16843758	0.84[ASW][hapmap]
rs16843781	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16843782	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16843788	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs16843808	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16843815	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16843835	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16843864	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16843881	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16843886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16843900	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16844001	1.00[GIH][hapmap]
rs16844072	1.00[GIH][hapmap]
rs34468781	0.91[ASN][1000 genomes]
rs34860393	1.00[ASN][1000 genomes]
rs34965887	0.91[ASN][1000 genomes]
rs35155048	0.91[ASN][1000 genomes]
rs66557721	0.91[ASN][1000 genomes]
rs72894099	1.00[ASN][1000 genomes]
rs7606534	1.00[CHB][hapmap]
rs825432	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6741490	LOC100131801	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141089200-141096200	Weak transcription	Small Intestine	intestine

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