Variant report
| Variant | rs16844001 |
|---|---|
| Chromosome Location | chr2:141215617-141215618 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs10188432 | 1.00[CHB][hapmap] |
| rs10496843 | 1.00[YRI][hapmap] |
| rs11891221 | 1.00[CHB][hapmap] |
| rs11897270 | 1.00[CHB][hapmap] |
| rs12990666 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs12999683 | 1.00[CHB][hapmap] |
| rs13003828 | 1.00[CHB][hapmap] |
| rs13007837 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs13030114 | 1.00[CHB][hapmap] |
| rs1401117 | 1.00[CHB][hapmap] |
| rs1518443 | 1.00[CHB][hapmap] |
| rs1518444 | 1.00[CHB][hapmap] |
| rs1518445 | 1.00[CHB][hapmap] |
| rs1518446 | 1.00[CHB][hapmap] |
| rs16843881 | 1.00[GIH][hapmap] |
| rs16843964 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs16843965 | 1.00[CEU][hapmap] |
| rs16843975 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs16843984 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16843999 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs16844032 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16844034 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16844072 | 1.00[GIH][hapmap] |
| rs17387299 | 1.00[CHB][hapmap] |
| rs1878741 | 1.00[CHB][hapmap] |
| rs1878742 | 1.00[CHB][hapmap] |
| rs1949452 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2030240 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap] |
| rs2030241 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs4293513 | 1.00[CHB][hapmap] |
| rs474084 | 1.00[CHB][hapmap] |
| rs487419 | 1.00[CHB][hapmap] |
| rs491391 | 1.00[CHB][hapmap] |
| rs492190 | 1.00[CHB][hapmap] |
| rs503742 | 1.00[CHB][hapmap] |
| rs6723181 | 1.00[CHB][hapmap] |
| rs6730266 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs6741490 | 1.00[GIH][hapmap] |
| rs6744731 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs6747180 | 1.00[CHB][hapmap] |
| rs7581949 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754266 | chr2:141023643-141270786 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv875186 | chr2:141123496-141217244 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 3 | esv2756334 | chr2:141166521-141285622 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
| 4 | nsv875187 | chr2:141170340-141237995 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS | n/a | n/a | inside rSNPs | n/a |
| 5 | nsv875188 | chr2:141207018-141253408 | Enhancers Weak transcription Active TSS Flanking Active TSS | n/a | n/a | inside rSNPs | n/a |
| 6 | nsv875189 | chr2:141207018-141258419 | Active TSS Flanking Active TSS Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
