Variant report

Variant	rs2030240
Chromosome Location	chr2:141218933-141218934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10188432	1.00[CHB][hapmap]
rs10496843	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11884532	1.00[AMR][1000 genomes]
rs11891221	1.00[CHB][hapmap]
rs11897270	1.00[CHB][hapmap]
rs11899317	1.00[AMR][1000 genomes]
rs11904593	1.00[AMR][1000 genomes]
rs12990666	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12999683	1.00[CHB][hapmap]
rs13003828	1.00[CHB][hapmap]
rs13007837	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13030114	1.00[CHB][hapmap]
rs1401117	1.00[CHB][hapmap]
rs1518443	1.00[CHB][hapmap]
rs1518444	1.00[CHB][hapmap]
rs1518445	1.00[CHB][hapmap]
rs1518446	1.00[CHB][hapmap]
rs16843964	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16843965	1.00[CEU][hapmap]
rs16843975	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16843984	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs16844001	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs16844032	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844034	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844052	1.00[AMR][1000 genomes]
rs16844065	1.00[AMR][1000 genomes]
rs16844069	1.00[AMR][1000 genomes]
rs16844072	1.00[TSI][hapmap];1.00[AMR][1000 genomes]
rs16844074	1.00[AMR][1000 genomes]
rs16844075	1.00[AMR][1000 genomes]
rs16844079	1.00[AMR][1000 genomes]
rs16844085	1.00[AMR][1000 genomes]
rs16844087	1.00[AMR][1000 genomes]
rs17387299	1.00[CHB][hapmap]
rs1878741	1.00[CHB][hapmap]
rs1878742	1.00[CHB][hapmap]
rs1949452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2030241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs34813383	1.00[AMR][1000 genomes]
rs4293513	1.00[CHB][hapmap]
rs474084	1.00[CHB][hapmap]
rs487419	1.00[CHB][hapmap]
rs491391	1.00[CHB][hapmap]
rs492190	1.00[CHB][hapmap]
rs503742	1.00[CHB][hapmap]
rs6723181	1.00[CHB][hapmap]
rs6730266	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6744731	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6747180	1.00[CHB][hapmap]
rs6757691	1.00[TSI][hapmap]
rs7581949	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2756334	chr2:141166521-141285622	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	nsv875187	chr2:141170340-141237995	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
4	nsv875188	chr2:141207018-141253408	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
5	nsv875189	chr2:141207018-141258419	Active TSS Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
6	nsv875190	chr2:141218933-141258419	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a
7	nsv875191	chr2:141218933-141268030	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a
8	nsv459518	chr2:141218933-141282923	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
9	nsv583191	chr2:141218933-141282923	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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