Variant report
| Variant | rs10928744 |
|---|---|
| Chromosome Location | chr2:140996234-140996235 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:140987688..140989881-chr2:140993819..140996733,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs12997262 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13012031 | 1.00[ASN][1000 genomes] |
| rs13019002 | 1.00[JPT][hapmap] |
| rs13021861 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs13028624 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs13028633 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1401113 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1401116 | 1.00[CHB][hapmap] |
| rs1568255 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1568256 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16843781 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs16843782 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs16843788 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs16843808 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16843815 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16843835 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs16843864 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16843881 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs16843886 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs16843900 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs34468781 | 0.91[ASN][1000 genomes] |
| rs34860393 | 1.00[ASN][1000 genomes] |
| rs34965887 | 0.91[ASN][1000 genomes] |
| rs35155048 | 0.91[ASN][1000 genomes] |
| rs36095075 | 0.87[EUR][1000 genomes] |
| rs4954671 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs66557721 | 0.91[ASN][1000 genomes] |
| rs6741490 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs72894099 | 1.00[ASN][1000 genomes] |
| rs7606534 | 1.00[CHB][hapmap] |
| rs825432 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv875180 | chr2:140735843-141004529 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv834392 | chr2:140920900-141086613 | Flanking Active TSS Weak transcription Enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv431757 | chr2:140931289-141098020 | Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 4 | esv2754491 | chr2:140947477-141026986 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
