Variant report

Variant	rs11883474
Chromosome Location	chr2:141041323-141041324
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11682825	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs12986472	1.00[CEU][hapmap]
rs12997262	1.00[MEX][hapmap]
rs13004456	0.83[AMR][1000 genomes]
rs13013026	1.00[CEU][hapmap]
rs13019002	0.88[CEU][hapmap]
rs13027596	0.89[CEU][hapmap]
rs13028094	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs13028624	0.81[CEU][hapmap]
rs13028898	1.00[CEU][hapmap]
rs13034087	0.89[CEU][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap]
rs13034290	0.89[CEU][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap]
rs13034293	1.00[CEU][hapmap]
rs13034302	1.00[ASW][hapmap];0.89[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.89[TSI][hapmap]
rs1518436	0.81[TSI][hapmap]
rs1518447	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs1568256	1.00[MEX][hapmap]
rs16843764	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes]
rs16843782	0.85[GIH][hapmap];1.00[MEX][hapmap]
rs16843791	0.89[CEU][hapmap];0.83[AMR][1000 genomes]
rs16843793	0.89[CEU][hapmap];0.83[AMR][1000 genomes]
rs16843798	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs16843815	0.85[GIH][hapmap];0.81[TSI][hapmap]
rs16843835	1.00[MEX][hapmap]
rs16843862	0.88[CEU][hapmap]
rs16843864	1.00[MEX][hapmap]
rs16843875	1.00[CEU][hapmap]
rs16843878	0.89[CEU][hapmap]
rs16843900	1.00[MEX][hapmap]
rs16856002	0.89[CEU][hapmap];0.83[AMR][1000 genomes]
rs17386407	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[GIH][hapmap];0.90[MKK][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes]
rs2176548	0.87[GIH][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap]
rs2380790	0.87[GIH][hapmap];1.00[MEX][hapmap]
rs36034993	0.83[AMR][1000 genomes]
rs4954671	1.00[MEX][hapmap]
rs4954830	0.87[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4954834	0.89[CEU][hapmap]
rs67772157	0.83[AMR][1000 genomes]
rs7581215	1.00[CEU][hapmap]
rs7592518	0.87[GIH][hapmap]
rs7597274	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs7597354	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs7607749	1.00[ASW][hapmap];0.89[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.89[TSI][hapmap]
rs7609072	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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