Variant report

Variant	rs1518436
Chromosome Location	chr2:141180467-141180468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11883474	0.81[TSI][hapmap]
rs13007077	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13012031	0.94[EUR][1000 genomes]
rs13019002	0.88[CEU][hapmap]
rs13027596	0.80[CEU][hapmap]
rs13028094	0.90[TSI][hapmap]
rs13028624	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs13034087	0.80[CEU][hapmap];0.90[TSI][hapmap]
rs13034290	0.80[CEU][hapmap];0.90[TSI][hapmap]
rs13034302	0.80[CEU][hapmap];0.90[TSI][hapmap]
rs1464212	0.91[ASW][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs1518447	0.90[TSI][hapmap]
rs1568255	0.82[MEX][hapmap]
rs1568256	0.83[TSI][hapmap]
rs16843764	0.90[TSI][hapmap]
rs16843791	0.80[CEU][hapmap]
rs16843793	0.80[CEU][hapmap]
rs16843808	1.00[CEU][hapmap]
rs16843815	1.00[CEU][hapmap];0.90[TSI][hapmap]
rs16843878	0.80[CEU][hapmap]
rs16856002	0.80[CEU][hapmap]
rs17386407	0.80[CEU][hapmap];0.90[TSI][hapmap]
rs34106853	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34965887	0.81[EUR][1000 genomes]
rs35193061	0.81[AFR][1000 genomes]
rs35458973	0.90[AMR][1000 genomes]
rs4954830	0.81[TSI][hapmap]
rs4954834	0.80[CEU][hapmap];0.86[AMR][1000 genomes]
rs60818438	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898252	0.90[AMR][1000 genomes]
rs72898269	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898274	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7371382	1.00[ASN][1000 genomes]
rs7571680	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7591861	0.86[AMR][1000 genomes]
rs7592518	0.82[MEX][hapmap]
rs7597274	0.90[TSI][hapmap]
rs7597354	0.90[TSI][hapmap]
rs7607749	0.80[CEU][hapmap];0.90[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875186	chr2:141123496-141217244	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2756334	chr2:141166521-141285622	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
4	nsv875187	chr2:141170340-141237995	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141173800-141187600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:141179800-141180600	Enhancers	Fetal Brain Female	brain
3	chr2:141179800-141181000	Enhancers	Fetal Brain Male	brain

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