Variant report

Variant	rs35458973
Chromosome Location	chr2:141176596-141176597
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11682825	0.89[EUR][1000 genomes]
rs12986472	0.97[EUR][1000 genomes]
rs12986741	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12992207	0.97[EUR][1000 genomes]
rs12992843	0.97[EUR][1000 genomes]
rs12992848	0.97[EUR][1000 genomes]
rs12993034	0.97[EUR][1000 genomes]
rs13004456	0.87[EUR][1000 genomes]
rs13007077	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs13013026	0.97[EUR][1000 genomes]
rs13013406	0.89[EUR][1000 genomes]
rs13027596	0.97[EUR][1000 genomes]
rs13028094	0.97[EUR][1000 genomes]
rs13028898	0.97[EUR][1000 genomes]
rs13030387	0.89[EUR][1000 genomes]
rs13030604	0.89[EUR][1000 genomes]
rs13034293	0.97[EUR][1000 genomes]
rs13034302	0.95[EUR][1000 genomes]
rs1518436	0.90[AMR][1000 genomes]
rs1518447	0.97[EUR][1000 genomes]
rs16843764	0.87[EUR][1000 genomes]
rs16843791	0.89[EUR][1000 genomes]
rs16843793	0.89[EUR][1000 genomes]
rs16843798	0.89[EUR][1000 genomes]
rs16843875	0.97[EUR][1000 genomes]
rs16843878	0.97[EUR][1000 genomes]
rs16843884	0.97[EUR][1000 genomes]
rs16843894	0.97[EUR][1000 genomes]
rs16856002	0.87[EUR][1000 genomes]
rs17386407	0.89[EUR][1000 genomes]
rs34106853	0.89[AMR][1000 genomes]
rs34263547	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34719523	0.97[EUR][1000 genomes]
rs34761163	0.97[EUR][1000 genomes]
rs35048746	0.97[EUR][1000 genomes]
rs35069826	0.97[EUR][1000 genomes]
rs35540108	0.89[EUR][1000 genomes]
rs35681677	0.97[EUR][1000 genomes]
rs36034993	0.86[EUR][1000 genomes]
rs4954834	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55827330	0.97[EUR][1000 genomes]
rs60818438	0.93[AMR][1000 genomes]
rs67772157	0.86[EUR][1000 genomes]
rs72898252	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898269	0.90[AMR][1000 genomes]
rs72898274	0.90[AMR][1000 genomes]
rs72898282	0.82[AFR][1000 genomes]
rs7558421	0.86[AFR][1000 genomes]
rs7571508	0.81[AFR][1000 genomes]
rs7571680	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7581105	0.97[EUR][1000 genomes]
rs7581215	0.97[EUR][1000 genomes]
rs7586024	0.95[EUR][1000 genomes]
rs7591861	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7597274	0.97[EUR][1000 genomes]
rs7597354	0.92[EUR][1000 genomes]
rs7599200	0.97[EUR][1000 genomes]
rs7607749	0.94[EUR][1000 genomes]
rs7609072	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv875186	chr2:141123496-141217244	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv2756334	chr2:141166521-141285622	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
5	nsv875187	chr2:141170340-141237995	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141173800-141187600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links