Variant report

Variant	rs17386407
Chromosome Location	chr2:141080884-141080885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11682825	0.89[CEU][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11883474	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[GIH][hapmap];0.90[MKK][hapmap];0.89[TSI][hapmap]
rs11891957	0.88[CEU][hapmap]
rs11902952	0.88[CEU][hapmap]
rs12986472	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12986741	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12992207	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12992843	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12992848	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12993034	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13004456	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13012031	0.84[AMR][1000 genomes]
rs13013026	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13013406	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13027596	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13028094	0.89[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13028624	0.84[AMR][1000 genomes]
rs13028898	0.86[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13030387	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13030604	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13034087	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs13034290	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs13034293	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13034302	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1518436	0.80[CEU][hapmap];0.90[TSI][hapmap]
rs1518447	0.89[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16843764	0.89[CEU][hapmap];1.00[GIH][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16843782	0.85[GIH][hapmap]
rs16843791	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16843793	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16843798	0.86[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16843808	0.80[CEU][hapmap]
rs16843815	0.88[CEU][hapmap];0.85[GIH][hapmap];0.90[TSI][hapmap]
rs16843826	1.00[YRI][hapmap]
rs16843862	1.00[CEU][hapmap]
rs16843875	0.88[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16843878	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16843884	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16843894	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16856002	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2176548	0.87[GIH][hapmap];0.85[TSI][hapmap]
rs2380790	0.87[GIH][hapmap];0.85[TSI][hapmap]
rs34263547	0.90[EUR][1000 genomes]
rs34719523	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34761163	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35048746	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35069826	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35458973	0.89[EUR][1000 genomes]
rs35540108	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35681677	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36034993	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4954830	0.87[GIH][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes]
rs4954834	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs55827330	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6727869	0.88[CEU][hapmap]
rs6740002	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67772157	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72898252	0.89[EUR][1000 genomes]
rs7581105	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7581215	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7586024	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7591861	0.89[EUR][1000 genomes]
rs7592518	0.87[GIH][hapmap];0.81[TSI][hapmap]
rs7597274	0.89[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7597354	0.89[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7599200	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7607749	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[GIH][hapmap];0.87[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7609072	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141080800-141082200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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