Variant report

Variant	rs6740002
Chromosome Location	chr2:141089347-141089348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11682825	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12986472	0.82[AMR][1000 genomes]
rs12986741	0.81[EUR][1000 genomes]
rs12992207	0.82[AMR][1000 genomes]
rs12992843	0.82[AMR][1000 genomes]
rs12992848	0.82[AMR][1000 genomes]
rs12993034	0.82[AMR][1000 genomes]
rs13004456	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13013026	0.82[AMR][1000 genomes]
rs13013406	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13027596	0.82[AMR][1000 genomes]
rs13028094	0.82[AMR][1000 genomes]
rs13028898	0.82[AMR][1000 genomes]
rs13030387	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13030604	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13034293	0.82[AMR][1000 genomes]
rs13034302	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1518447	0.82[AMR][1000 genomes]
rs16843764	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16843791	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16843793	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16843798	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16843884	0.82[AMR][1000 genomes]
rs16843894	0.82[AMR][1000 genomes]
rs16856002	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17386407	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34263547	0.81[EUR][1000 genomes]
rs34719523	0.82[AMR][1000 genomes]
rs34761163	0.82[AMR][1000 genomes]
rs35048746	0.82[AMR][1000 genomes]
rs35069826	0.82[AMR][1000 genomes]
rs35681677	0.82[AMR][1000 genomes]
rs36034993	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55827330	0.82[AMR][1000 genomes]
rs67772157	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7581105	0.82[AMR][1000 genomes]
rs7581215	0.82[AMR][1000 genomes]
rs7586024	0.82[AMR][1000 genomes]
rs7597274	0.82[AMR][1000 genomes]
rs7597354	0.82[AMR][1000 genomes]
rs7599200	0.82[AMR][1000 genomes]
rs7607749	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7609072	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141089200-141096200	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links