Variant report

Variant	rs4954830
Chromosome Location	chr2:141123496-141123497
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:141121172..141124109-chr2:141126429..141129083,2	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11682825	0.87[AMR][1000 genomes]
rs11883474	0.87[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12986472	0.88[YRI][hapmap];0.96[AMR][1000 genomes]
rs12986741	0.87[AMR][1000 genomes]
rs12992207	0.96[AMR][1000 genomes]
rs12992843	0.96[AMR][1000 genomes]
rs12992848	0.96[AMR][1000 genomes]
rs12993034	0.96[AMR][1000 genomes]
rs12997262	1.00[MEX][hapmap];0.82[YRI][hapmap]
rs13004456	0.87[AMR][1000 genomes]
rs13012031	0.88[AMR][1000 genomes]
rs13013026	0.96[AMR][1000 genomes]
rs13013406	0.86[AMR][1000 genomes]
rs13016851	0.90[YRI][hapmap];0.81[AMR][1000 genomes]
rs13027596	0.88[YRI][hapmap];0.96[AMR][1000 genomes]
rs13028094	1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.96[AMR][1000 genomes]
rs13028624	0.89[YRI][hapmap];0.88[AMR][1000 genomes]
rs13028898	0.96[AMR][1000 genomes]
rs13030387	0.86[AMR][1000 genomes]
rs13030604	0.86[AMR][1000 genomes]
rs13034087	0.87[GIH][hapmap];0.89[TSI][hapmap]
rs13034290	0.87[GIH][hapmap];0.89[TSI][hapmap]
rs13034293	0.87[YRI][hapmap];0.96[AMR][1000 genomes]
rs13034302	1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.89[TSI][hapmap];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1518436	0.81[TSI][hapmap]
rs1518447	1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap];0.96[AMR][1000 genomes]
rs1568255	0.88[GIH][hapmap]
rs1568256	0.88[GIH][hapmap];1.00[MEX][hapmap]
rs1607390	0.81[AMR][1000 genomes]
rs16843764	0.87[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes]
rs16843782	1.00[MEX][hapmap]
rs16843791	0.87[AMR][1000 genomes]
rs16843793	0.87[AMR][1000 genomes]
rs16843798	0.87[AMR][1000 genomes]
rs16843815	0.81[TSI][hapmap]
rs16843830	0.82[YRI][hapmap]
rs16843835	0.88[GIH][hapmap];1.00[MEX][hapmap]
rs16843862	1.00[YRI][hapmap]
rs16843864	0.88[GIH][hapmap];1.00[MEX][hapmap]
rs16843875	0.87[YRI][hapmap];0.91[AMR][1000 genomes]
rs16843878	0.89[YRI][hapmap];0.86[AMR][1000 genomes]
rs16843884	0.96[AMR][1000 genomes]
rs16843894	0.96[AMR][1000 genomes]
rs16843900	0.88[GIH][hapmap];1.00[MEX][hapmap]
rs16856002	0.87[AMR][1000 genomes]
rs17386407	0.87[GIH][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes]
rs2176548	1.00[GIH][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap]
rs2380790	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs34263547	0.83[AMR][1000 genomes]
rs34719523	0.96[AMR][1000 genomes]
rs34761163	0.96[AMR][1000 genomes]
rs35048746	0.96[AMR][1000 genomes]
rs35069826	0.96[AMR][1000 genomes]
rs35424079	0.81[AMR][1000 genomes]
rs35540108	0.91[AMR][1000 genomes]
rs35681677	0.96[AMR][1000 genomes]
rs36034993	0.87[AMR][1000 genomes]
rs4954671	1.00[MEX][hapmap]
rs55827330	0.96[AMR][1000 genomes]
rs67641696	0.81[AMR][1000 genomes]
rs67772157	0.87[AMR][1000 genomes]
rs7581105	0.96[AMR][1000 genomes]
rs7581215	0.88[YRI][hapmap];0.96[AMR][1000 genomes]
rs7586024	0.96[AMR][1000 genomes]
rs7592518	1.00[GIH][hapmap]
rs7597274	1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.96[AMR][1000 genomes]
rs7597354	1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.96[AMR][1000 genomes]
rs7599200	0.96[AMR][1000 genomes]
rs7607749	1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.89[TSI][hapmap];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7609072	0.89[YRI][hapmap];0.96[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv459496	chr2:141111125-141151319	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv583189	chr2:141111125-141151319	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv875186	chr2:141123496-141217244	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141118400-141124200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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