Variant report

Variant	rs6430898
Chromosome Location	chr2:141125182-141125183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10202846	0.89[ASN][1000 genomes]
rs12692042	0.89[CHB][hapmap]
rs12692048	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12692049	0.87[CHB][hapmap]
rs12992137	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12996989	0.89[CHB][hapmap]
rs12999447	0.89[CHB][hapmap]
rs13001299	0.82[CHB][hapmap]
rs13002228	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13004107	0.89[CHB][hapmap]
rs13009775	0.89[CHB][hapmap]
rs13017246	0.88[CHB][hapmap];0.89[ASN][1000 genomes]
rs13021878	0.89[CHB][hapmap]
rs13382933	0.93[CHB][hapmap];0.87[ASN][1000 genomes]
rs13386580	0.82[CHB][hapmap]
rs13407545	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13414281	0.88[ASN][1000 genomes]
rs1386355	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1401121	0.94[CHB][hapmap];0.87[ASN][1000 genomes]
rs1401122	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs1401123	0.82[ASN][1000 genomes]
rs1518450	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16843835	0.85[YRI][hapmap]
rs17385521	0.81[CHB][hapmap]
rs17477145	0.89[CHB][hapmap]
rs1968911	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs2046563	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2046565	0.82[CHB][hapmap]
rs2945572	0.80[AMR][1000 genomes]
rs35699793	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs35871598	0.82[ASN][1000 genomes]
rs4954828	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs591185	0.88[ASN][1000 genomes]
rs597222	0.93[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs600802	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs623670	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs633689	0.94[CHB][hapmap]
rs639195	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs641780	0.87[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs650706	0.80[AMR][1000 genomes]
rs652923	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs658631	0.94[CHB][hapmap]
rs667446	1.00[CHB][hapmap]
rs682371	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7563544	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs825429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv459496	chr2:141111125-141151319	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv583189	chr2:141111125-141151319	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv875186	chr2:141123496-141217244	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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