Variant report

Variant	rs10202846
Chromosome Location	chr2:141113362-141113363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10204667	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12692042	0.85[CEU][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.87[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12692049	0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12692050	0.88[CEU][hapmap]
rs12992137	0.84[CHD][hapmap];0.82[ASN][1000 genomes]
rs13002228	0.84[CHD][hapmap];0.82[ASN][1000 genomes]
rs13009775	0.85[CEU][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13017246	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13022878	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13028524	0.89[ASN][1000 genomes]
rs13028948	0.89[ASN][1000 genomes]
rs13031109	0.89[ASN][1000 genomes]
rs13382933	0.86[CHB][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13386580	1.00[ASW][hapmap];0.96[CEU][hapmap];0.88[CHD][hapmap];0.94[TSI][hapmap]
rs13393822	0.86[LWK][hapmap]
rs13407545	0.88[ASN][1000 genomes]
rs13414281	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1386355	0.87[ASN][1000 genomes]
rs1401121	0.96[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1401122	0.96[CEU][hapmap];0.84[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1401123	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1486967	0.81[CEU][hapmap]
rs1518450	0.83[CHD][hapmap];0.88[ASN][1000 genomes]
rs17385521	0.80[CEU][hapmap]
rs17477145	0.96[CEU][hapmap]
rs1968911	0.88[ASW][hapmap];0.96[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2046563	0.93[CHD][hapmap]
rs35000420	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35699793	1.00[ASW][hapmap];0.96[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35871598	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35958180	0.89[ASN][1000 genomes]
rs57938125	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs591185	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs600802	0.84[CHD][hapmap]
rs633689	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[CHD][hapmap]
rs639195	0.81[ASN][1000 genomes]
rs652923	0.89[CEU][hapmap];0.84[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs658631	0.96[CEU][hapmap];0.88[CHB][hapmap]
rs682371	0.82[CHB][hapmap];0.93[CHD][hapmap];0.82[ASN][1000 genomes]
rs7563544	0.80[ASW][hapmap];0.92[CEU][hapmap];0.88[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.92[TSI][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs825429	0.86[CHD][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv459496	chr2:141111125-141151319	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv583189	chr2:141111125-141151319	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141106200-141113600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:141107400-141113400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:141111400-141114600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:141112000-141114200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:141112000-141114400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:141112200-141116600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:141112400-141113400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr2:141112800-141114600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:141113000-141114000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr2:141113200-141114000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr2:141113200-141114200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:141113200-141114600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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