Variant report

Variant	rs12692050
Chromosome Location	chr2:141085122-141085123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10202846	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10204667	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12692042	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12692049	0.86[CEU][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12996989	1.00[JPT][hapmap]
rs12999447	1.00[JPT][hapmap]
rs13001299	1.00[JPT][hapmap]
rs13004107	1.00[JPT][hapmap]
rs13009775	0.81[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13017246	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13021878	1.00[JPT][hapmap]
rs13022878	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13028524	0.80[ASN][1000 genomes]
rs13028948	0.80[ASN][1000 genomes]
rs13031109	0.80[ASN][1000 genomes]
rs13382933	1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13386580	0.93[CEU][hapmap]
rs13414281	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1401121	0.93[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1401122	0.93[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1401123	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1486967	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs17385521	0.93[CEU][hapmap];0.88[JPT][hapmap]
rs17477145	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs1968911	0.92[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2046565	0.89[CEU][hapmap];0.88[JPT][hapmap]
rs35000420	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35699793	0.92[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35871598	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35958180	0.82[ASN][1000 genomes]
rs4954828	0.93[CHB][hapmap]
rs57938125	0.84[EUR][1000 genomes]
rs591185	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs623670	0.93[CHB][hapmap]
rs633689	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs641780	0.92[CHB][hapmap]
rs652923	0.83[EUR][1000 genomes]
rs658631	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs7563544	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7567599	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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