Variant report

Variant	rs13382933
Chromosome Location	chr2:141106894-141106895
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10202846	0.86[CHB][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10204667	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12692042	0.93[CHB][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12692048	0.81[ASN][1000 genomes]
rs12692049	0.92[CHB][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12692050	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs12992137	0.93[CHB][hapmap];0.85[ASN][1000 genomes]
rs12996989	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12999447	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs13001299	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs13002228	0.93[CHB][hapmap];0.85[ASN][1000 genomes]
rs13004107	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs13009775	0.93[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13017246	0.93[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13021878	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs13022878	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13028524	0.92[ASN][1000 genomes]
rs13028948	0.92[ASN][1000 genomes]
rs13031109	0.92[ASN][1000 genomes]
rs13386580	0.92[CHB][hapmap];0.85[YRI][hapmap]
rs13407545	0.85[ASN][1000 genomes]
rs13414281	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1386355	0.89[ASN][1000 genomes]
rs1401121	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1401122	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1401123	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1486967	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1518450	0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs17385521	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs17477145	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1968911	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2046563	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs2046565	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs35000420	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35699793	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35871598	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35958180	0.92[ASN][1000 genomes]
rs57938125	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs591185	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs597222	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs600802	0.93[CHB][hapmap]
rs633689	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs639195	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs6430898	0.93[CHB][hapmap]
rs652923	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs658631	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs667446	0.93[CHB][hapmap]
rs682371	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs7563544	0.93[CHB][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7567599	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs825429	0.93[CHB][hapmap];0.85[ASN][1000 genomes]
rs902844	0.81[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141105400-141107600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr2:141106000-141107000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:141106200-141113600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:141106400-141107000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr2:141106400-141107400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:141106800-141107000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:141106800-141112200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:141106800-141113000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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