Variant report

Variant	rs1401122
Chromosome Location	chr2:141102545-141102546
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10202846	0.96[CEU][hapmap];0.84[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10204667	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12612781	1.00[YRI][hapmap]
rs12692042	0.89[CEU][hapmap];0.94[CHB][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12692048	0.86[ASN][1000 genomes]
rs12692049	0.95[CEU][hapmap];0.93[CHB][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12692050	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs12992137	0.94[CHB][hapmap];0.89[ASN][1000 genomes]
rs12996989	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12999447	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs13001299	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs13002228	0.94[CHB][hapmap];0.89[ASN][1000 genomes]
rs13004107	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs13009775	0.89[CEU][hapmap];0.94[CHB][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13017246	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13021878	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs13022878	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13028524	0.96[ASN][1000 genomes]
rs13028948	0.96[ASN][1000 genomes]
rs13031109	0.96[ASN][1000 genomes]
rs13382933	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13386580	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs13407545	0.81[ASN][1000 genomes]
rs13414281	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1386355	0.85[ASN][1000 genomes]
rs1401121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1401123	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1486967	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1518450	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs17385521	0.85[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs17477145	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1968911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2046563	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs2046565	0.82[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap]
rs35000420	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35699793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35871598	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35958180	0.96[ASN][1000 genomes]
rs57938125	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs591185	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs597222	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs600802	0.94[CHB][hapmap]
rs633689	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs639195	0.88[CHB][hapmap];0.88[ASN][1000 genomes]
rs6430898	0.94[CHB][hapmap]
rs652923	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs658631	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs667446	0.94[CHB][hapmap]
rs682371	0.88[CHB][hapmap];0.89[ASN][1000 genomes]
rs7563544	0.89[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7567599	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs825429	0.94[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141101800-141102600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:141101800-141102800	Enhancers	Hela-S3	cervix
3	chr2:141102400-141102800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:141102400-141103000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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