Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10202846	0.89[ASN][1000 genomes]
rs10204667	1.00[ASN][1000 genomes]
rs12692042	1.00[ASN][1000 genomes]
rs12692048	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12692049	1.00[ASN][1000 genomes]
rs12992137	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13002228	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13009775	1.00[ASN][1000 genomes]
rs13017246	0.89[ASN][1000 genomes]
rs13022878	1.00[ASN][1000 genomes]
rs13028524	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13031109	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13382933	0.92[ASN][1000 genomes]
rs13414281	0.88[ASN][1000 genomes]
rs1386355	0.81[ASN][1000 genomes]
rs1401121	0.92[ASN][1000 genomes]
rs1401122	0.96[ASN][1000 genomes]
rs1401123	0.96[ASN][1000 genomes]
rs1968911	0.96[ASN][1000 genomes]
rs2046563	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35000420	0.98[ASN][1000 genomes]
rs35699793	0.96[ASN][1000 genomes]
rs35871598	0.96[ASN][1000 genomes]
rs35958180	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs591185	0.88[ASN][1000 genomes]
rs597222	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs639195	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs652923	0.82[ASN][1000 genomes]
rs682371	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141043800-141047800	Weak transcription	Dnd41	blood
2	chr2:141046800-141047600	Weak transcription	Fetal Intestine Large	intestine
3	chr2:141047200-141048200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search: