Variant report

Variant	rs35699793
Chromosome Location	chr2:141102038-141102039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:141096050..141098665-chr2:141100590..141102243,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10202846	1.00[ASW][hapmap];0.96[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10204667	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12692042	0.89[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12692048	0.86[ASN][1000 genomes]
rs12692049	0.95[CEU][hapmap];0.93[CHB][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12692050	0.92[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs12992137	0.94[CHB][hapmap];0.93[CHD][hapmap];0.83[MEX][hapmap];0.89[ASN][1000 genomes]
rs12996989	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12999447	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs13001299	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs13002228	0.94[CHB][hapmap];0.93[CHD][hapmap];0.83[MEX][hapmap];0.89[ASN][1000 genomes]
rs13004107	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs13009775	0.89[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13017246	0.96[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13021878	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs13022878	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13028524	0.96[ASN][1000 genomes]
rs13028948	0.96[ASN][1000 genomes]
rs13031109	0.96[ASN][1000 genomes]
rs13382933	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13386580	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[CHD][hapmap];0.97[TSI][hapmap];0.88[YRI][hapmap]
rs13393822	0.82[LWK][hapmap]
rs13407545	0.81[ASN][1000 genomes]
rs13414281	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1386355	0.85[ASN][1000 genomes]
rs1401121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1401122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1401123	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1486967	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs1518450	0.94[CHB][hapmap];0.93[CHD][hapmap];0.83[MEX][hapmap];0.81[ASN][1000 genomes]
rs17385521	0.84[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17477145	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1968911	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2046563	0.88[CHB][hapmap];0.86[CHD][hapmap];0.83[MEX][hapmap];0.86[ASN][1000 genomes]
rs2046565	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs35000420	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35871598	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35958180	0.96[ASN][1000 genomes]
rs57938125	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs591185	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs597222	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs600802	0.94[CHB][hapmap];0.93[CHD][hapmap]
rs633689	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs639195	0.88[CHB][hapmap];0.88[ASN][1000 genomes]
rs6430898	0.94[CHB][hapmap]
rs652923	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs658631	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs667446	0.94[CHB][hapmap];0.87[CHD][hapmap]
rs682371	0.88[CHB][hapmap];0.83[CHD][hapmap];0.89[ASN][1000 genomes]
rs7563544	0.80[ASW][hapmap];0.89[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7567599	0.81[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs825429	0.94[CHB][hapmap];0.83[CHD][hapmap];0.81[ASN][1000 genomes]
rs902844	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141101800-141102600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:141101800-141102800	Enhancers	Hela-S3	cervix

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