Variant report

Variant	rs1386355
Chromosome Location	chr2:141106115-141106116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10202846	0.87[ASN][1000 genomes]
rs10204667	0.81[ASN][1000 genomes]
rs12692042	0.81[ASN][1000 genomes]
rs12692048	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12692049	0.81[ASN][1000 genomes]
rs12992137	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13002228	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13009775	0.81[ASN][1000 genomes]
rs13017246	0.87[ASN][1000 genomes]
rs13022878	0.81[ASN][1000 genomes]
rs13028524	0.81[ASN][1000 genomes]
rs13028948	0.81[ASN][1000 genomes]
rs13031109	0.81[ASN][1000 genomes]
rs13382933	0.89[ASN][1000 genomes]
rs13407545	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13414281	0.86[ASN][1000 genomes]
rs1401121	0.89[ASN][1000 genomes]
rs1401122	0.85[ASN][1000 genomes]
rs1401123	0.85[ASN][1000 genomes]
rs1518450	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1968911	0.85[ASN][1000 genomes]
rs2046563	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2945572	0.82[AMR][1000 genomes]
rs35699793	0.85[ASN][1000 genomes]
rs35871598	0.85[ASN][1000 genomes]
rs35958180	0.81[ASN][1000 genomes]
rs591185	0.86[ASN][1000 genomes]
rs597222	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs639195	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs650706	0.82[AMR][1000 genomes]
rs652923	0.80[ASN][1000 genomes]
rs682371	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7563544	0.98[ASN][1000 genomes]
rs825429	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141105400-141107600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr2:141106000-141106800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr2:141106000-141106800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:141106000-141106800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr2:141106000-141107000	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links