Variant report

Variant	rs650706
Chromosome Location	chr2:141090347-141090348
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12692048	0.86[AMR][1000 genomes]
rs12992137	0.87[MEX][hapmap];0.86[AMR][1000 genomes]
rs13002228	0.87[MEX][hapmap];0.85[AMR][1000 genomes]
rs13004107	0.87[MEX][hapmap]
rs1386355	0.82[AMR][1000 genomes]
rs1518450	0.87[MEX][hapmap];0.80[AMR][1000 genomes]
rs2046563	0.87[MEX][hapmap];0.85[AMR][1000 genomes]
rs2945572	0.82[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs595789	0.87[ASN][1000 genomes]
rs597222	0.83[YRI][hapmap];0.90[AMR][1000 genomes]
rs600802	0.91[MEX][hapmap];0.83[YRI][hapmap]
rs603956	0.84[YRI][hapmap]
rs607494	0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs623670	0.91[MEX][hapmap];0.83[YRI][hapmap]
rs634115	0.89[CHB][hapmap]
rs638198	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs639195	0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs649284	0.91[CEU][hapmap]
rs651125	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs654051	0.82[ASW][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs655308	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs667446	0.94[ASW][hapmap];0.96[CEU][hapmap];0.88[GIH][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs6755087	0.87[CEU][hapmap];0.95[CHB][hapmap]
rs682371	0.83[AMR][1000 genomes]
rs7340225	0.82[YRI][hapmap]
rs825429	0.91[MEX][hapmap];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141089200-141096200	Weak transcription	Small Intestine	intestine

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