Variant report

Variant	rs7340225
Chromosome Location	chr2:141121736-141121737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:141121172..141124109-chr2:141126429..141129083,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10195473	0.94[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10469558	0.89[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap]
rs10496839	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs10496840	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs10928746	0.80[ASN][1000 genomes]
rs11896219	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12464830	0.82[JPT][hapmap]
rs12476338	0.80[ASN][1000 genomes]
rs12477489	0.88[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap]
rs12479163	0.94[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs12612910	0.89[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap]
rs13010738	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs13021003	0.87[CHB][hapmap]
rs13413773	0.94[CHB][hapmap]
rs13424233	0.88[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap]
rs1386356	0.94[CHB][hapmap]
rs1388809	0.89[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap]
rs1486961	0.84[CEU][hapmap]
rs1486963	0.88[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs1492393	0.81[CHB][hapmap]
rs1518441	0.94[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap]
rs1532001	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs2029628	0.89[CEU][hapmap]
rs2171322	0.94[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs2945572	0.93[YRI][hapmap]
rs55945474	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs598786	0.94[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs607494	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62171603	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs650706	0.82[YRI][hapmap]
rs654051	0.94[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs655308	0.82[YRI][hapmap]
rs6717281	0.89[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6755822	0.89[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap]
rs72894048	0.85[ASN][1000 genomes]
rs72896229	0.84[ASN][1000 genomes]
rs7567150	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs982233	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv459496	chr2:141111125-141151319	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv583189	chr2:141111125-141151319	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141118400-141124200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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