Variant report
| Variant | rs12464830 |
|---|---|
| Chromosome Location | chr2:140999818-140999819 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10195473 | 0.81[JPT][hapmap] |
| rs10469558 | 0.81[CHB][hapmap];0.94[JPT][hapmap] |
| rs10496839 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap] |
| rs10496840 | 0.94[JPT][hapmap] |
| rs12477489 | 1.00[JPT][hapmap] |
| rs12479163 | 0.94[JPT][hapmap] |
| rs12612910 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs12616889 | 0.88[ASN][1000 genomes] |
| rs13010738 | 0.81[CHB][hapmap];0.81[JPT][hapmap] |
| rs13021003 | 0.86[CHB][hapmap] |
| rs13413773 | 0.81[CHB][hapmap] |
| rs13424233 | 0.87[CHB][hapmap];1.00[JPT][hapmap] |
| rs1386356 | 0.81[CHB][hapmap] |
| rs1388809 | 0.87[CHB][hapmap];1.00[JPT][hapmap] |
| rs1486963 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1518441 | 0.81[CHB][hapmap];0.81[JPT][hapmap] |
| rs1532001 | 0.88[JPT][hapmap] |
| rs16843689 | 0.81[CHB][hapmap];0.84[JPT][hapmap] |
| rs2171322 | 0.94[JPT][hapmap] |
| rs598786 | 0.94[JPT][hapmap] |
| rs607494 | 0.81[CHB][hapmap];0.82[JPT][hapmap] |
| rs6717281 | 0.87[CHB][hapmap];1.00[JPT][hapmap] |
| rs6755822 | 0.87[CHB][hapmap];1.00[JPT][hapmap] |
| rs7340225 | 0.82[JPT][hapmap] |
| rs7567150 | 0.81[CHB][hapmap];0.81[JPT][hapmap] |
| rs982233 | 0.81[CHB][hapmap];0.88[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv875180 | chr2:140735843-141004529 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv834392 | chr2:140920900-141086613 | Flanking Active TSS Weak transcription Enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv431757 | chr2:140931289-141098020 | Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 4 | esv2754491 | chr2:140947477-141026986 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
