Variant report

Variant	rs10496840
Chromosome Location	chr2:141050608-141050609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10195473	0.83[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10469558	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10469593	0.82[MEX][hapmap]
rs10496839	0.93[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap]
rs10928746	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11896219	0.81[ASN][1000 genomes]
rs12464830	0.94[JPT][hapmap]
rs12476338	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12477489	1.00[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.89[ASN][1000 genomes]
rs12479163	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12612910	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs13010738	0.81[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs13021003	0.93[CHB][hapmap]
rs13413773	1.00[CHB][hapmap]
rs13424233	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs1386356	1.00[CHB][hapmap]
rs1388809	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs1486963	0.93[CHB][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap]
rs1492393	0.87[CHB][hapmap];0.92[CHD][hapmap]
rs1518441	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1532001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2171322	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.92[TSI][hapmap]
rs55945474	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs598786	0.84[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs607494	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62171603	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs654051	0.84[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6717281	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs6755822	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs72894048	0.84[ASN][1000 genomes]
rs72896229	0.80[ASN][1000 genomes]
rs7340225	0.93[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs7567150	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs7581796	0.82[MEX][hapmap]
rs982233	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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