Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10180435	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10469593	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap]
rs1047874	0.90[CHB][hapmap]
rs10496840	0.82[MEX][hapmap]
rs11895946	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12104972	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12476338	0.83[AMR][1000 genomes]
rs12477489	0.96[MEX][hapmap];0.83[AMR][1000 genomes]
rs12479163	0.96[MEX][hapmap]
rs13021003	0.83[CEU][hapmap];0.85[GIH][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap]
rs13387241	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs13413773	0.83[CEU][hapmap]
rs13416149	0.89[CHB][hapmap]
rs1386356	0.96[CEU][hapmap]
rs1486958	0.90[CHB][hapmap]
rs1486961	0.95[CHB][hapmap]
rs1486968	0.89[CHB][hapmap]
rs1492388	0.90[CHB][hapmap]
rs1492393	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[GIH][hapmap];0.90[LWK][hapmap];0.91[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap]
rs2029629	0.90[CHB][hapmap]
rs2046566	0.89[CHB][hapmap]
rs2171322	0.96[MEX][hapmap]
rs2839772	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6743080	0.90[CHB][hapmap]
rs7424028	0.83[CEU][hapmap]
rs7579083	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7581796	NXPH2	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141027000-141028000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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